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Report for CCDS90065.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90065.1 Public Mus musculus 6 Lrrtm4 23 108 98 CCDS HistoryNCBI Gene:243499Re-query CCDS DB by CCDS ID:90065.1Re-query CCDS DB by GeneID:243499See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90065.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000133918.7 ENSMUSP00000115016.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000133918.7Link to Ensembl Protein Viewer:ENSMUSP00000115016.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000133918Re-query CCDS DB by Protein ID:ENSMUSP00000115016
Original member Current member EBI ENSMUST00000126399.1 ENSMUSP00000121124.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000126399.1Link to Ensembl Protein Viewer:ENSMUSP00000121124.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000126399Re-query CCDS DB by Protein ID:ENSMUSP00000121124
Original member Current member NCBI NM_001347261.1 NP_001334190.1 Accepted alive Link to Nucleotide Sequence:NM_001347261.1Link to Protein Sequence:NP_001334190.1Re-query CCDS DB by Nucleotide ID:NM_001347261Re-query CCDS DB by Protein ID:NP_001334190Link to BLAST:NP_001334190.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334190.1 590 Q80XG9-1 590 100% 0 0

Chromosomal Locations for CCDS 90065.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 80019703 80019706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 80021614 80023160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 80808968 80809189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1773 nt):
ATGGGTTTCCGTCTAATCACGCAGCTGAAAGGCATGAGTGTGTTTCTGGTGCTATTTCCCACCCTGCTGC
TGGTTATGCTGACGGGGGCTCAGAGAGCTTGCCCAAAGAACTGCAGATGCGATGGCAAGATTGTATACTG
TGAGTCTCACGCCTTCGCAGACATCCCTGAGAACATTTCTGGAGGGTCACAAGGTTTATCCTTAAGGTTC
AACAGCATTCAGAAACTCAAATCCAATCAGTTTGCCGGCCTTAACCAGCTTATATGGCTTTATCTTGACC
ATAATTACATTAGCTCAGTGGACGAAGATGCCTTTCAAGGGATCCGCAGACTGAAAGAATTAATTCTAAG
CTCCAACAAAATTACCTATCTGCACAATAAAACATTTCACCCAGTCCCCAACCTCCGCAACCTGGATCTC
TCCTACAACAAACTTCAGACCTTACAGTCTGAGCAGTTTAAAGGCCTCCGGAAACTCATCATTTTGCACT
TGCGATCTAATTCTCTCAAGACCGTGCCCATACGGGTTTTTCAAGACTGCCGGAACCTTGACTTTCTGGA
TTTGGGTTATAATCGGCTCCGAAGCTTATCCCGAAACGCGTTTGCCGGTCTTCTGAAGTTAAAAGAGCTC
CACCTGGAGCATAATCAGTTTTCAAAGATCAACTTTGCTCATTTTCCTCGTCTCTTCAACCTGCGATCCA
TCTACCTGCAATGGAACAGGATCCGCTCTGTCAGTCAAGGCCTAACATGGACCTGGAGTTCCTTGCACAC
CTTGGATTTATCAGGGAATGACATCCAAGCAATCGAGCCTGGCACATTTAAATGCCTCCCCAATTTGCAA
AAATTGAATTTGGATTCCAACAAGCTCACCAATGTCTCCCAGGAGACTGTCAATGCATGGATATCCTTAA
TATCCATCACCTTGTCTGGAAACATGTGGGAATGTAGTCGGAGCATCTGTCCTCTATTCTACTGGCTGAA
GAATTTCAAAGGGAATAAAGAAAGTACCATGATATGTGCAGGGCCTAAGCACATACAGGGTGAGAAGGTT
AGCGATGCCGTGGAGACTTACAACATCTGCTCTGATGTCCAGGTGGTCAACACAGAACGATCACATCTGG
CGCCTCAAACTCCCCAGAAGCCCCCGTTCATCCCCAAACCTACCATCTTCAAACCGGATGCAGTCCCAGC
CACCCTAGAGGCAGTGAGCCCATCCCCGGGCTTTCAAATTCCAGGTACGGATCATGAGTACGAGCACGTG
TCGTTTCACAAAATCATCGCAGGGAGCGTGGCTCTGTTCCTCTCCGTGGCCATGATTCTCCTGGTGATCT
ATGTGTCTTGGAAACGGTACCCAGCCAGCATGAAACAACTCCAACAGCACTCACTTATGAAGAGGAGACG
GAAAAAGGCGAGGGAGTCGGAGAGACAGATGAATTCCCCTTTACAGGAATACTACGTGGACTACAAACCG
ACGAACTCTGAGACCATGGATATATCGGTTAATGGATCTGGTCCCTGCACATATACCATCTCTGGCTCCA
GGGAGTGTGAGATACCCCACCATGTGAAGCCCCTGCCGTATTACAGCTATGACCAACCAGTGATTGGGTA
CTGCCAGGCCCACCAGCCTCTCCACATCAACAAGGCTTATGAAGCTGTGTCTATAGAACAGGATGACAGC
CCCAGTTTGGAGCTTGGGAGAGACCACAGCTTCATTGCCACCATAGCCAGGTCGGCTGCACCTGCCATTT
ATCTGGAGAGAATAACAAACTAA

Translation (590 aa):
MGFRLITQLKGMSVFLVLFPTLLLVMLTGAQRACPKNCRCDGKIVYCESHAFADIPENISGGSQGLSLRF
NSIQKLKSNQFAGLNQLIWLYLDHNYISSVDEDAFQGIRRLKELILSSNKITYLHNKTFHPVPNLRNLDL
SYNKLQTLQSEQFKGLRKLIILHLRSNSLKTVPIRVFQDCRNLDFLDLGYNRLRSLSRNAFAGLLKLKEL
HLEHNQFSKINFAHFPRLFNLRSIYLQWNRIRSVSQGLTWTWSSLHTLDLSGNDIQAIEPGTFKCLPNLQ
KLNLDSNKLTNVSQETVNAWISLISITLSGNMWECSRSICPLFYWLKNFKGNKESTMICAGPKHIQGEKV
SDAVETYNICSDVQVVNTERSHLAPQTPQKPPFIPKPTIFKPDAVPATLEAVSPSPGFQIPGTDHEYEHV
SFHKIIAGSVALFLSVAMILLVIYVSWKRYPASMKQLQQHSLMKRRRKKARESERQMNSPLQEYYVDYKP
TNSETMDISVNGSGPCTYTISGSRECEIPHHVKPLPYYSYDQPVIGYCQAHQPLHINKAYEAVSIEQDDS
PSLELGRDHSFIATIARSAAPAIYLERITN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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