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Report for CCDS18436.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
18436.1 |
Public |
Mus musculus |
4 |
Dio1 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:13370](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:18436.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:13370](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 4 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana)
Attributes |
Contains selenocysteine |
Sequence IDs included in CCDS 18436.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000082426.9 |
ENSMUSP00000081007.3 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000082426.9](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000081007.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000082426](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000081007](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_007860.4 |
NP_031886.3 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_007860.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_031886.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_007860](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_031886](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_031886.3](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_031886.3 |
257 |
Q61153 |
257 |
99.6109% |
0 |
1 |
Chromosomal Locations for CCDS 18436.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also. |
Translation Exceptions: replace the symbol * (codon TGA) with U at amino acid position 126
Nucleotide Sequence (774 nt): ATGGGGCTGCCCCAGCTATGGCTGTGGCTGAAGCGGCTTGTGATATTCCTGCAGGTGGCCTTGGAGGTGG CTGTAGGCAAGGTGCTAATGACGCTGTTCCCAGGGAGAGTCAAACAGAGCATCCTGGCCATGGGCCAGAA GACCGGGATGGCCAGGAACCCCCGATTCGCCCCTGACAACTGGGTCCCCACCTTCTTCAGCATCCAGTAC TTCTGGTTTGTCCTGAAGGTCCGCTGGCAGAGACTGGAAGACAGGGCTGAGTTTGGGGGGCTGGCCCCCA ACTGCACCGTGGTCTGCCTCTCAGGACAGAAGTGCAACATCTGGGATTTCATTCAAGGCAGCAGGCCCCT GGTGTTGAACTTTGGCAGTTGCACCTGACCTTCATTTCTTCTCAAATTTGACCAGTTCAAGAGACTCGTA GATGACTTTGCCTCCACAGCCGATTTCCTCATCATTTACATTGAAGAAGCTCACGCCACAGATGGCTGGG CTTTTAAGAACAACGTGGACATCCGGCAGCACCGGAGCCTCCAGGAGCGCGTGCGGGCAGCCCGCATGCT GCTGGCCAGGAGCCCCCAGTGCCCTGTGGTGGTGGACACAATGCAGAACCAGAGCAGCCAGCTCTACGCG GCCCTGCCTGAGAGGCTCTACGTGATACAGGAGGGCAGGATCTGCTACAAGGGTAAAGCTGGCCCTTGGA ACTACAATCCTGAGGAAGTCCGAGCTGTCCTGGAAAAGCTTTGCACTCCACCTAGACACGTGCCTCAGCT CTAG
Translation (257 aa): MGLPQLWLWLKRLVIFLQVALEVAVGKVLMTLFPGRVKQSILAMGQKTGMARNPRFAPDNWVPTFFSIQY FWFVLKVRWQRLEDRAEFGGLAPNCTVVCLSGQKCNIWDFIQGSRPLVLNFGSCTUPSFLLKFDQFKRLV DDFASTADFLIIYIEEAHATDGWAFKNNVDIRQHRSLQERVRAARMLLARSPQCPVVVDTMQNQSSQLYA ALPERLYVIQEGRICYKGKAGPWNYNPEEVRAVLEKLCTPPRHVPQL
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