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Report for CCDS84429.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84429.1 Public Mus musculus 19 Vldlr 23 108 98 CCDS HistoryNCBI Gene:22359Re-query CCDS DB by CCDS ID:84429.1Re-query CCDS DB by GeneID:22359See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84429.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047645.12 ENSMUSP00000049145.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047645.12Link to Ensembl Protein Viewer:ENSMUSP00000049145.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000047645Re-query CCDS DB by Protein ID:ENSMUSP00000049145
Original member Current member NCBI NM_001347441.1 NP_001334370.1 Accepted alive Link to Nucleotide Sequence:NM_001347441.1Link to Protein Sequence:NP_001334370.1Re-query CCDS DB by Nucleotide ID:NM_001347441Re-query CCDS DB by Protein ID:NP_001334370Link to BLAST:NP_001334370.1

Chromosomal Locations for CCDS 84429.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 27217615 27217696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 27230196 27230315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 27234790 27234912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 27238053 27238424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 27238510 27238632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 27238724 27238846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 27239622 27239741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 27239845 27239970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 27240466 27240637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 27241235 27241453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 27243065 27243183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 27243758 27243897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 27244199 27244340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 27245535 27245681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 27247010 27247090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 27247857 27248026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 27249105 27249140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2415 nt):
ATGGGCACGTCCGCGCGCTGGGCGCTGTGGCTGCTGCTCGCGCTGTGCTGGGCGCCCCGGGACAGCGGCG
CCACTGCAAGCGGGAAGAAAGCCAAATGTGATAGCTCCCAGTTTCAGTGCACAAATGGCCGCTGCATTAC
CCTGCTGTGGAAATGTGATGGAGATGAAGACTGTGCGGATGGCAGCGACGAGAAGAACTGTGTAAAGAAG
ACGTGTGCTGAGTCTGACTTCGTGTGCAAAAACGGCCAGTGTGTTCCTAACAGATGGCAGTGTGACGGGG
ATCCTGATTGCGAAGACGGTTCTGATGAAAGCCCTGAACAGTGCCGCAACATAACATGTAGTGCAGATGA
GTTCACTTGCTCCAGTGGCCGCTGCGTCTCCAGAAACTTTGTGTGCAATGGCCAGGATGACTGTGACGAT
GGCAGTGATGAGCTGGACTGTGCTCCACCAACCTGCGGAGCCCACGAGTTCCAGTGCAGCACCTCTTCCT
GCATTCCCCTCAGCTGGGTGTGTGATGATGACGCAGACTGTTCAGACCAATCAGACGAGTCTCTTGAGCA
GTGTGGCCGTCAGCCTGTGATACATACCAAATGTCCTACCAGTGAGATCCAGTGTGGCTCTGGCGAGTGC
ATTCACAAAAAATGGCGGTGTGACGGAGACCCTGACTGCAAGGACGGCAGCGATGAGGTCAACTGCCCTT
CTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAA
TGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACGTCAATCAGTGCCTGGGCCCT
GGAAAGTTCAAGTGCAGAAGCGGGGAATGCATAGACATGAGCAAAGTATGTGACCAGGAACAAGACTGCA
GAGACTGGAGTGACGAGCCCCTGAAGGAATGCCATATCAACGAATGCCTGGTCAATAATGGTGGCTGTTC
CCATATCTGCAAAGACCTAGTTATAGGTTATGAGTGTGATTGTGCAGCTGGGTTTGAACTGATAGATAGG
AAAACCTGTGGAGATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAG
GCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAGG
CAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATAC
ATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTT
GGGCTGATCTCAGCCAGAAGGCCATCTTCAGTGCCTCAATTGATGACAAGGTTGGTAGACATTTTAAAAT
GATCGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGAT
GCGGCTTCTAAGACTATTTCAGTAGCTACCCTAGACGGAGCCAAGAGGAAGTTCCTGTTTAATTCTGACT
TGCGAGAGCCTGCCTCCATAGCTGTGGATCCGTTGTCGGGCTTTGTTTACTGGTCAGACTGGGGCGAGCC
AGCTAAAATAGAAAAAGCAGGAATGAATGGATTTGATAGACGTCCTCTGGTGACGGAGGACATCCAATGG
CCTAATGGAATTACACTCGACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCT
CTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCT
TGCACTCACCATATTTGAGGATCGCGTCTACTGGATAGATGGAGAAAATGAAGCAGTGTACGGTGCCAAT
AAATTCACTGGGTCAGAGCTGGCCACTCTAGTGAATAATCTCAATGATGCCCAAGACATCATTGTCTACC
ATGAACTCGTCCAGCCGTCAGGTAAAAACTGGTGTGAAGACGATATGGAGAATGGAGGATGTGAATATCT
CTGCCTGCCAGCACCACAGATCAATGACCACTCTCCAAAATATACCTGTTCCTGTCCCAATGGGTACAAT
CTCGAAGAAAATGGACGAGAGTGTCAAAGGATCAATGTGACCACAGCAGTATCAGAAGTCAGTGTTCCCC
CAAAAGGGACTTCAGCTGCCTGGGCCATCCTTCCTCTCTTGCTCTTAGTGATGGCAGCAGTAGGTGGCTA
CTTGATGTGGAGGAATTGGCAACATAAAAACATGAAAAGCATGAACTTTGACAATCCTGTGTACTTGAAG
ACCACTGAAGAGGACCTGTCGATAGACATTGGTAGACACAGCGCTTCTGTAGGACACACATACCCAGCAA
TATCAGTTGTAAGCACAGATGATGATCTGGCTTGA

Translation (804 aa):
MGTSARWALWLLLALCWAPRDSGATASGKKAKCDSSQFQCTNGRCITLLWKCDGDEDCADGSDEKNCVKK
TCAESDFVCKNGQCVPNRWQCDGDPDCEDGSDESPEQCRNITCSADEFTCSSGRCVSRNFVCNGQDDCDD
GSDELDCAPPTCGAHEFQCSTSSCIPLSWVCDDDADCSDQSDESLEQCGRQPVIHTKCPTSEIQCGSGEC
IHKKWRCDGDPDCKDGSDEVNCPSRTCRPDQFECEDGSCIHGSRQCNGIRDCVDGSDEVNCKNVNQCLGP
GKFKCRSGECIDMSKVCDQEQDCRDWSDEPLKECHINECLVNNGGCSHICKDLVIGYECDCAAGFELIDR
KTCGDIDECQNPGICSQICINLKGGYKCECSRGYQMDLATGVCKAVGKEPSLIFTNRRDIRKIGLERKEY
IQLVEQLRNTVALDADIAAQKLFWADLSQKAIFSASIDDKVGRHFKMIDNVYNPAAIAVDWVYKTIYWTD
AASKTISVATLDGAKRKFLFNSDLREPASIAVDPLSGFVYWSDWGEPAKIEKAGMNGFDRRPLVTEDIQW
PNGITLDLVKSRLYWLDSKLHMLSSVDLNGQDRRIVLKSLEFLAHPLALTIFEDRVYWIDGENEAVYGAN
KFTGSELATLVNNLNDAQDIIVYHELVQPSGKNWCEDDMENGGCEYLCLPAPQINDHSPKYTCSCPNGYN
LEENGRECQRINVTTAVSEVSVPPKGTSAAWAILPLLLLVMAAVGGYLMWRNWQHKNMKSMNFDNPVYLK
TTEEDLSIDIGRHSASVGHTYPAISVVSTDDDLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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