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Report for CCDS13579.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13579.1 Public Homo sapiens 21 ADAMTS5 24 110 108 CCDS HistoryNCBI Gene:11096Re-query CCDS DB by CCDS ID:13579.1See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13579.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000284987.6 ENSP00000284987.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000284987.6Link to Ensembl Protein Viewer:ENSP00000284987.5Re-query CCDS DB by Nucleotide ID:ENST00000284987Re-query CCDS DB by Protein ID:ENSP00000284987
Original member Current member NCBI NM_007038.5 NP_008969.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007038.5Link to Protein Sequence:NP_008969.2Re-query CCDS DB by Nucleotide ID:NM_007038Re-query CCDS DB by Protein ID:NP_008969Link to BLAST:NP_008969.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_008969.2 930 Q9UNA0 930 100% 0 0

Chromosomal Locations for CCDS 13579.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 26924053 26924620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 26929886 26930061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 26932004 26932179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 26932861 26933044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 26934466 26934749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 26943380 26943547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 26954739 26954871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 26965288 26966391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2793 nt):
ATGCTGCTCGGGTGGGCGTCCCTGCTGCTGTGCGCGTTCCGCCTGCCCCTGGCCGCGGTCGGCCCCGCCG
CGACACCTGCCCAGGATAAAGCCGGGCAGCCTCCGACTGCTGCAGCAGCCGCCCAGCCCCGCCGGCGGCA
GGGGGAGGAGGTGCAGGAGCGAGCCGAGCCTCCCGGCCACCCGCACCCCCTGGCGCAGCGGCGCAGGAGC
AAGGGGCTGGTGCAGAACATCGACCAACTCTACTCCGGCGGCGGCAAGGTGGGCTACCTCGTCTACGCGG
GCGGCCGGAGGTTCCTCTTGGACCTGGAGCGAGATGGTTCGGTGGGCATTGCTGGCTTCGTGCCCGCAGG
AGGCGGGACGAGTGCGCCCTGGCGCCACCGGAGCCACTGCTTCTATCGGGGCACAGTGGACGGTAGTCCC
CGCTCTCTGGCTGTCTTTGACCTCTGTGGGGGTCTCGACGGCTTCTTCGCGGTCAAGCACGCGCGCTACA
CCCTAAAGCCACTGCTGCGCGGACCCTGGGCGGAGGAAGAAAAGGGGCGCGTGTACGGGGATGGGTCCGC
ACGGATCCTGCACGTCTACACCCGCGAGGGCTTCAGCTTCGAGGCCCTGCCGCCGCGCGCCAGCTGCGAA
ACCCCCGCGTCCACACCGGAGGCCCACGAGCATGCTCCGGCGCACAGCAACCCGAGCGGACGCGCAGCAC
TGGCCTCGCAGCTCTTGGACCAGTCCGCTCTCTCGCCCGCTGGGGGCTCAGGACCGCAGACGTGGTGGCG
GCGGCGGCGCCGCTCCATCTCCCGGGCCCGCCAGGTGGAGCTGCTTCTGGTGGCTGACGCGTCCATGGCG
CGGTTGTATGGCCGGGGCCTGCAGCATTACCTGCTGACCCTGGCCTCCATCGCCAATAGGCTGTACAGCC
ATGCTAGCATCGAGAACCACATCCGCCTGGCCGTGGTGAAGGTGGTGGTGCTAGGCGACAAGGACAAGAG
CCTGGAAGTGAGCAAGAACGCTGCCACCACACTCAAGAACTTTTGCAAGTGGCAGCACCAACACAACCAG
CTGGGAGATGACCATGAGGAGCACTACGATGCAGCTATCCTGTTTACTCGGGAGGATTTATGTGGGCATC
ATTCATGTGACACCCTGGGAATGGCAGACGTTGGGACCATATGTTCTCCAGAGCGCAGCTGTGCTGTGAT
TGAAGACGATGGCCTCCACGCAGCCTTCACTGTGGCTCACGAAATCGGACATTTACTTGGCCTCTCCCAT
GACGATTCCAAATTCTGTGAAGAGACCTTTGGTTCCACAGAAGATAAGCGCTTAATGTCTTCCATCCTTA
CCAGCATTGATGCATCTAAGCCCTGGTCCAAATGCACTTCAGCCACCATCACAGAATTCCTGGATGATGG
CCATGGTAACTGTTTGCTGGACCTACCACGAAAGCAGATCCTGGGCCCCGAAGAACTCCCAGGACAGACC
TACGATGCCACCCAGCAGTGCAACCTGACATTCGGGCCTGAGTACTCCGTGTGTCCCGGCATGGATGTCT
GTGCTCGCCTGTGGTGTGCTGTGGTACGCCAGGGCCAGATGGTCTGTCTGACCAAGAAGCTGCCTGCGGT
GGAAGGGACGCCTTGTGGAAAGGGGAGAATCTGCCTGCAGGGCAAATGTGTGGACAAAACCAAGAAAAAA
TATTATTCAACGTCAAGCCATGGCAACTGGGGATCTTGGGGATCCTGGGGCCAGTGTTCTCGCTCATGTG
GAGGAGGAGTGCAGTTTGCCTATCGTCACTGTAATAACCCTGCTCCCAGAAACAACGGACGCTACTGCAC
AGGGAAGAGGGCCATCTACCGCTCCTGCAGTCTCATGCCCTGCCCACCCAATGGTAAATCATTTCGTCAT
GAACAGTGTGAGGCCAAAAATGGCTATCAGTCTGATGCAAAAGGAGTCAAAACTTTTGTGGAATGGGTTC
CCAAATATGCAGGTGTCCTGCCAGCGGATGTGTGCAAGCTGACCTGCAGAGCCAAGGGCACTGGCTACTA
TGTGGTATTTTCTCCAAAGGTGACCGATGGCACTGAATGTAGGCTGTACAGTAATTCCGTCTGCGTCCGG
GGGAAGTGTGTGAGAACTGGCTGTGACGGCATCATTGGCTCAAAGCTGCAGTATGACAAGTGCGGAGTAT
GTGGAGGAGACAACTCCAGCTGTACAAAGATTGTTGGAACCTTTAATAAGAAAAGTAAGGGTTACACTGA
CGTGGTGAGGATTCCTGAAGGGGCAACCCACATAAAAGTTCGACAGTTCAAAGCCAAAGACCAGACTAGA
TTCACTGCCTATTTAGCCCTGAAAAAGAAAAACGGTGAGTACCTTATCAATGGAAAGTACATGATCTCCA
CTTCAGAGACTATCATTGACATCAATGGAACAGTCATGAACTATAGCGGTTGGAGCCACAGGGATGACTT
CCTGCATGGCATGGGCTACTCTGCCACGAAGGAAATTCTAATAGTGCAGATTCTTGCAACAGACCCCACT
AAACCATTAGATGTCCGTTATAGCTTTTTTGTTCCCAAGAAGTCCACTCCAAAAGTAAACTCTGTCACTA
GTCATGGCAGCAATAAAGTGGGATCACACACTTCGCAGCCGCAGTGGGTCACGGGCCCATGGCTCGCCTG
CTCTAGGACCTGTGACACAGGTTGGCACACCAGAACGGTGCAGTGCCAGGATGGAAACCGGAAGTTAGCA
AAAGGATGTCCTCTCTCCCAAAGGCCTTCTGCGTTTAAGCAATGCTTGTTGAAGAAATGTTAG

Translation (930 aa):
MLLGWASLLLCAFRLPLAAVGPAATPAQDKAGQPPTAAAAAQPRRRQGEEVQERAEPPGHPHPLAQRRRS
KGLVQNIDQLYSGGGKVGYLVYAGGRRFLLDLERDGSVGIAGFVPAGGGTSAPWRHRSHCFYRGTVDGSP
RSLAVFDLCGGLDGFFAVKHARYTLKPLLRGPWAEEEKGRVYGDGSARILHVYTREGFSFEALPPRASCE
TPASTPEAHEHAPAHSNPSGRAALASQLLDQSALSPAGGSGPQTWWRRRRRSISRARQVELLLVADASMA
RLYGRGLQHYLLTLASIANRLYSHASIENHIRLAVVKVVVLGDKDKSLEVSKNAATTLKNFCKWQHQHNQ
LGDDHEEHYDAAILFTREDLCGHHSCDTLGMADVGTICSPERSCAVIEDDGLHAAFTVAHEIGHLLGLSH
DDSKFCEETFGSTEDKRLMSSILTSIDASKPWSKCTSATITEFLDDGHGNCLLDLPRKQILGPEELPGQT
YDATQQCNLTFGPEYSVCPGMDVCARLWCAVVRQGQMVCLTKKLPAVEGTPCGKGRICLQGKCVDKTKKK
YYSTSSHGNWGSWGSWGQCSRSCGGGVQFAYRHCNNPAPRNNGRYCTGKRAIYRSCSLMPCPPNGKSFRH
EQCEAKNGYQSDAKGVKTFVEWVPKYAGVLPADVCKLTCRAKGTGYYVVFSPKVTDGTECRLYSNSVCVR
GKCVRTGCDGIIGSKLQYDKCGVCGGDNSSCTKIVGTFNKKSKGYTDVVRIPEGATHIKVRQFKAKDQTR
FTAYLALKKKNGEYLINGKYMISTSETIIDINGTVMNYSGWSHRDDFLHGMGYSATKEILIVQILATDPT
KPLDVRYSFFVPKKSTPKVNSVTSHGSNKVGSHTSQPQWVTGPWLACSRTCDTGWHTRTVQCQDGNRKLA
KGCPLSQRPSAFKQCLLKKC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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