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Report for CCDS38480.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38480.1 Public Mus musculus 3 Smg5 23 108 98 CCDS HistoryNCBI Gene:229512Re-query CCDS DB by CCDS ID:38480.1Re-query CCDS DB by GeneID:229512See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38480.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001451.10 ENSMUSP00000001451.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001451.10Link to Ensembl Protein Viewer:ENSMUSP00000001451.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000001451Re-query CCDS DB by Protein ID:ENSMUSP00000001451
Original member Current member NCBI NM_178246.3 NP_839977.2 Accepted alive Link to Nucleotide Sequence:NM_178246.3Link to Protein Sequence:NP_839977.2Re-query CCDS DB by Nucleotide ID:NM_178246Re-query CCDS DB by Protein ID:NP_839977Link to BLAST:NP_839977.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_839977.2 1017 Q6ZPY2-1 1017 100% 0 0

Chromosomal Locations for CCDS 38480.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 88336424 88336497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88341858 88341956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88342441 88342564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88342880 88343036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88345363 88345452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88346445 88346534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88347518 88347596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88349142 88349267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88349376 88349444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88350016 88350224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88350697 88350834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88350979 88351581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88352963 88353138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88353876 88353951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88354532 88354707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88355578 88355736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88358653 88358712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88359027 88359186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88359548 88359638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88360331 88360405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88360754 88360892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88361025 88361108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3054 nt):
ATGAGCCAAGGCCCTCCTCCAGGGGAGAGCAGCGAACCCGAGGCAAAGGTCCTCCACACCAAGCGGCTTT
ACCGGGCTGTGGTGGAGGCTGTGCATCGGCTAGATCTCATCCTTTGCAACAAAGCTGCTTATCAGGAAGT
GTTCAAACCAGAGAACGTTAGCCTGAGGAACAAGCTACGAGAGCTCTGTGTGAAGCTTATGTTCTTGCAT
CCAGTAGACTATGGGAGGAAGGCTGAGGAACTGCTGTGGAGAAAGGTATACTATGAAGTTATCCAACTTA
TCAAGACTAACAAAAAGCACATCCACAGTCGGAGCACCTTGGAATGTGCCTACAGGACTCATCTGGTCGC
TGGCATTGGCTTCTACCAGCATCTCCTTCTCTATATCCAGTCCCACTACCAGCTGGAACTACAGTGCTGC
ATCGACTGGACTCACGTCACCGATCCCCTCATGGGATTCAAGAAGCCAGTATCTGCTTCAGGAAAGGAGA
TGGATTGGGCACAAATGGCTTGCCACCGATGCCTGGTGTACCTGGGGGATCTGTCACGCTATCAGAATGA
GTTGGCTGGTGTGGACACCGAGCTGCTAGCTGAGAGATTCTACTATCAAGCCTTGTCAGTGGCTCCCCAG
ATTGGAATGCCCTTCAACCAGCTGGGTACCCTTGCAGGCAGCAAGTATTACAACGTGGAAGCCATGTATT
GCTACTTGCGCTGCATCCAGTCGGAAGTGTCCTTTGAGGGAGCCTATGGGAACCTCAAGAGACTATATGA
CAAGGCAGCCAAAATGTACCACCAGTTGAAGAAGTCTGAGACCAGGAAGCTCTCCCCTAGCAAAAAGCGA
TGCAAAGACATTAAGAGGTTGTTGGTGAACTTCATGTACCTACAAAGCCTGTTACAGCCCAAAAGTAGCT
CCGTGGACTCAGAACTGACCTCACTCTGCCAGTCAGTCCTAGAGGATTTCAACCTCTGCCTCTTCTACCT
GCCCTCCTCACCCAACCTTGGTCTAACCAACGAGGATGAGGAGGAGTGTGAAAGTGGATATGCTTTCCTC
CCCGACCTGCTCATCTTTCAGATGGCCATCATCTGCCTCATGGGTGTGCACAGTTTAAAGAGAGCAGGAT
CCAAGCATTATAGTGCAGCCATTGCTTTCACCCTGGCCCTCTTTTCCCACCTTATCAATCATGTCAACAT
ACGGCTGCAGGCGGAACTGGAAGAGGGCGAGAACCCTGTCTCAGCTTTTCAGAGTGATGGCACAGATGAA
CCAGAGTCAAAAGAAGCACTAGAAAAAGAGGAGCCAGAGCCTGAGCCTCCCACTGTGGTACCCCAAGCTG
ATGAGGGCAGAAAGAGCCGTAAGCACTCCCGACTCTCTTGTCTACGTCGTCGCCGCCGCCACCATCCTCC
TAAAGCTGGTGATGACAGTGACCTGAGTGAGGGTTTTGAATCTGACTCTAGCCATGACTCTGCCCAGGCC
AGTGACGGCTCAGACAGTGGCTCTGATAAGAGCCTGGAAGGCAGGGGCACTGCTTTTGATGCAGAGACAG
ACTCAGAAATGAACAGCCAGGAGTCCCGGTCAGACCTGGAAGATATGGAGGATGAGGAGGGGACAAGATC
TCCAGCCCAGGAGCCCCCTCAGGCCAGATCAGAGGTTCCAGATTCCCTCAATGGCCCCCTGGGCCCCAGT
GAAGCAAGCATTGCCAGCAATTTACAAGCCATGTCCACCCAGATGTTCCAGACCAAGCGCTGCTTCCGAC
TGGCTCCCACTTTCAGCAACCTGCTCCTGCAGCCCACCACGGAACCTAACAGTGTGGCCAGTCACAGGCC
TTGTGTCAACGGGGATATGGACAAGCCTTTAGAACCAGCCTCTGAGGATGGCTCCGAGTCAGAGGGGAGC
GAGTCCAGCAACCGCTCCTGTCGCAACGAGCGCAGCCTTCAGGAGAAGCTGCAGGCCCTGATGGCTGAGG
GCCTCCTTCCTGCTGTGAAGGTCTTCCTGGACTGGCTGCGAACCAACCCTGACCTCATCATCGTGTGTGC
ACAGAGCTCTCAAAGTTTGTGGAACCGCCTGTCTGTGTTGCTGAATCTGTTGCCAGCATCTGCTGAGCTC
CAGGATTCTGGCCTGGCTCTGTGTTCCGAAGTCCAAGGTCTCCTTGAAGGCTGCGAGCTGCCTGACCTCC
CTGCCAGCCTGCTGCTCCCAGAGGACATGGCACTGCGTAACCTACCTCCTCTGCGGGCTGCTCATAGACG
CTTTAACTTTGACGCAGATCGGCCCCTGCTCAGTGCTTTAGAGGAGTCGGTGGTGCGCATCTGCTGTATC
CGCAGCTTTGGGCACTTTGTTGCTCGCTTACAAGGCAGCATCCTGCAGTTCAATCCAGAGGTCGGCATCT
TCGTCAGCATTGCTCAGTCTGAGCAGGAGAGCCTGCTGCAGCAGGCCCAGGCCCAGTTTCGTATGGCAGA
GGAGGAGGCTCGGCGGAACAGGCTCATGAGAGACATGGCTCAGCTACGATTACAGCTCGAGGTCTCCCAA
CTGGAAGGGAGCCTACAGCAGCCCAAAGCTCAGTCAGCCATGTCTCCCTACCTCATCCCTGACACCCAGG
CCCTCTGCTACCACCTCCCTCTTATCCGCCAGCTTGCCACCAGTGGCCGCTTCATCATCATCATTCCAAG
GACAGTGATTGATGGCCTGGATTTGCTGAAGAAAGAACAGCCAGGGGCCAGGGATGGCATCCGGTACCTG
GAGGCAGAGTTTAAAAAGGGAAACAGATACATTCGCTGCCAGAAGGAGGTGGGAAAGAGCTTTGAGCGGC
ATAAACTGAAGAGGCAGGATGCAGATGCCTGGACTCTCTATAAGATCCTGGACAGCTGCAGACAGCTAAC
TCTGGCCCAGGGGGCAGGGGAGGAGGACCCAAGTGGCATGGTGACCATTATCACAGGCCTTCATTTGGAC
AGCCCCAGTGCACTCTCTGGGCCCATGCAGGCTGCCCTGCAAGCTGCTGCCCATGCCAGTGTGGACGTCA
AGAACGTTCTAGACTTCTACAGGCAGTGGAAGGAGATTGGTTGA

Translation (1017 aa):
MSQGPPPGESSEPEAKVLHTKRLYRAVVEAVHRLDLILCNKAAYQEVFKPENVSLRNKLRELCVKLMFLH
PVDYGRKAEELLWRKVYYEVIQLIKTNKKHIHSRSTLECAYRTHLVAGIGFYQHLLLYIQSHYQLELQCC
IDWTHVTDPLMGFKKPVSASGKEMDWAQMACHRCLVYLGDLSRYQNELAGVDTELLAERFYYQALSVAPQ
IGMPFNQLGTLAGSKYYNVEAMYCYLRCIQSEVSFEGAYGNLKRLYDKAAKMYHQLKKSETRKLSPSKKR
CKDIKRLLVNFMYLQSLLQPKSSSVDSELTSLCQSVLEDFNLCLFYLPSSPNLGLTNEDEEECESGYAFL
PDLLIFQMAIICLMGVHSLKRAGSKHYSAAIAFTLALFSHLINHVNIRLQAELEEGENPVSAFQSDGTDE
PESKEALEKEEPEPEPPTVVPQADEGRKSRKHSRLSCLRRRRRHHPPKAGDDSDLSEGFESDSSHDSAQA
SDGSDSGSDKSLEGRGTAFDAETDSEMNSQESRSDLEDMEDEEGTRSPAQEPPQARSEVPDSLNGPLGPS
EASIASNLQAMSTQMFQTKRCFRLAPTFSNLLLQPTTEPNSVASHRPCVNGDMDKPLEPASEDGSESEGS
ESSNRSCRNERSLQEKLQALMAEGLLPAVKVFLDWLRTNPDLIIVCAQSSQSLWNRLSVLLNLLPASAEL
QDSGLALCSEVQGLLEGCELPDLPASLLLPEDMALRNLPPLRAAHRRFNFDADRPLLSALEESVVRICCI
RSFGHFVARLQGSILQFNPEVGIFVSIAQSEQESLLQQAQAQFRMAEEEARRNRLMRDMAQLRLQLEVSQ
LEGSLQQPKAQSAMSPYLIPDTQALCYHLPLIRQLATSGRFIIIIPRTVIDGLDLLKKEQPGARDGIRYL
EAEFKKGNRYIRCQKEVGKSFERHKLKRQDADAWTLYKILDSCRQLTLAQGAGEEDPSGMVTIITGLHLD
SPSALSGPMQAALQAAAHASVDVKNVLDFYRQWKEIG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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