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Report for CCDS55201.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55201.1 Public Homo sapiens 8 DLC1 24 110 108 CCDS HistoryNCBI Gene:10395Re-query CCDS DB by CCDS ID:55201.1Re-query CCDS DB by GeneID:10395See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55201.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000520226.5 ENSP00000428028.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000520226.5Link to Ensembl Protein Viewer:ENSP00000428028.1Re-query CCDS DB by Nucleotide ID:ENST00000520226Re-query CCDS DB by Protein ID:ENSP00000428028
Original member Current member NCBI NM_001164271.2 NP_001157743.1 Accepted alive Link to Nucleotide Sequence:NM_001164271.2Link to Protein Sequence:NP_001157743.1Re-query CCDS DB by Nucleotide ID:NM_001164271Re-query CCDS DB by Protein ID:NP_001157743Link to BLAST:NP_001157743.1
Original member Current member NCBI NM_001348082.2 NP_001335011.1 Accepted alive Link to Nucleotide Sequence:NM_001348082.2Link to Protein Sequence:NP_001335011.1Re-query CCDS DB by Nucleotide ID:NM_001348082Re-query CCDS DB by Protein ID:NP_001335011Link to BLAST:NP_001335011.1
Original member Current member NCBI NM_001348083.1 NP_001335012.1 Accepted alive Link to Nucleotide Sequence:NM_001348083.1Link to Protein Sequence:NP_001335012.1Re-query CCDS DB by Nucleotide ID:NM_001348083Re-query CCDS DB by Protein ID:NP_001335012Link to BLAST:NP_001335012.1
Original member Current member NCBI NM_001348084.2 NP_001335013.1 Accepted alive Link to Nucleotide Sequence:NM_001348084.2Link to Protein Sequence:NP_001335013.1Re-query CCDS DB by Nucleotide ID:NM_001348084Re-query CCDS DB by Protein ID:NP_001335013Link to BLAST:NP_001335013.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157743.1 1017 Q96QB1-4 1017 100% 0 0
NP_001335011.1 1017 Q96QB1-4 1017 100% 0 0
NP_001335012.1 1017 Q96QB1-4 1017 100% 0 0
NP_001335013.1 1017 Q96QB1-4 1017 100% 0 0

Chromosomal Locations for CCDS 55201.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 13085811 13085931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13086290 13086463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13088487 13088704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13090252 13090470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13091318 13091432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13092612 13092825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13094759 13094957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13095086 13095245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13098399 13098575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13099347 13100770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13102790 13102822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3054 nt):
ATGAAGCTAGAAATTAGTCCTCATCGGAAACGAAGTGACGATTCAGACGAGGATGAGCCTTGTGCCATCA
GTGGCAAATGGACTTTCCAAAGGGACAGCAAGAGGTGGTCCCGGCTTGAAGAGTTTGATGTCTTTTCTCC
AAAACAAGACCTGGTCCCTGGGTCCCCAGACGACTCCCACCCGAAGGACGGCCCCAGCCCCGGAGGCACG
CTGATGGACCTCAGCGAGCGCCAGGAGGTGTCTTCCGTCCGCAGCCTCAGCAGCACTGGCAGCCTCCCCA
GCCACGCGCCCCCCAGCGAGGATGCTGCCACCCCCCGGACTAACTCCGTCATCAGCGTTTGCTCCTCCAG
CAACTTGGCAGGCAATGACGACTCTTTCGGCAGCCTGCCCTCTCCCAAGGAACTGTCCAGCTTCAGCTTC
AGCATGAAAGGCCACGAAAAAACTGCCAAGTCCAAGACGCGCAGTCTGCTGAAACGGATGGAGAGCCTGA
AGCTCAAGAGCTCCCATCACAGCAAGCACAAAGCGCCCTCAAAGCTGGGGTTGATCATCAGCGGGCCCAT
CTTGCAAGAGGGGATGGATGAGGAGAAGCTGAAGCAGCTCAACTGCGTGGAGATCTCCGCCCTCAATGGC
AACCGCATCAACGTCCCCATGGTACGAAAGAGGAGCGTTTCCAACTCCACGCAGACCAGCAGCAGCAGCA
GCCAGTCGGAGACCAGCAGCGCGGTCAGCACGCCCAGCCCTGTTACGAGGACCCGGAGCCTCAGTGCGTG
CAACAAGCGGGTGGGCATGTACTTAGAGGGCTTCGATCCTTTCAATCAGTCAACATTTAACAACGTGGTG
GAGCAGAACTTTAAGAACCGCGAGAGCTACCCAGAGGACACGGTGTTCTACATCCCTGAAGATCACAAGC
CTGGCACTTTCCCCAAAGCTCTCACCAATGGCAGTTTCTCCCCCTCGGGGAATAACGGCTCTGTGAACTG
GAGGACGGGAAGCTTCCACGGCCCTGGCCACATCAGCCTCAGGAGGGAAAACAGTAGCGACAGCCCCAAG
GAACTGAAGAGACGCAATTCTTCCAGCTCCATGAGCAGCCGCCTGAGCATCTACGACAACGTGCCGGGCT
CCATCCTCTACTCCAGTTCAGGGGACCTGGCGGATCTGGAGAACGAGGACATCTTCCCCGAGCTGGACGA
CATCCTCTACCACGTGAAGGGGATGCAGCGGATAGTCAATCAGTGGTCGGAGAAGTTTTCTGATGAGGGA
GATTCGGACTCAGCCCTGGACTCGGTCTCTCCCTGCCCGTCCTCTCCAAAACAGATACACCTGGATGTGG
ACAACGACCGAACCACACCCAGCGACCTGGACAGCACAGGCAACTCCCTGAATGAACCGGAAGAGCCCTC
CGAGATCCCGGAAAGAAGGGATTCTGGGGTTGGGGCTTCCCTAACCAGGTCCAACAGGCACCGACTGAGA
TGGCACAGTTTCCAGAGCTCACATCGGCCAAGCCTCAACTCTGTATCACTACAGATTAACTGCCAGTCTG
TGGCCCAGATGAACCTGCTGCAGAAATACTCACTCCTAAAGCTAACGGCCCTGCTGGAGAAATACACACC
TTCTAACAAGCATGGTTTTAGCTGGGCCGTGCCCAAGTTCATGAAGAGGATCAAGGTTCCAGACTACAAG
GACCGGAGTGTGTTTGGGGTCCCACTGACGGTCAACGTGCAGCGCACAGGACAACCGTTGCCTCAGAGCA
TCCAGCAGGCCATGCGATACCTCCGGAACCATTGTTTGGATCAGGTTGGGCTCTTCAGAAAATCGGGGGT
CAAGTCCCGGATTCAGGCTCTGCGCCAGATGAATGAAGGTGCCATAGACTGTGTCAACTACGAAGGACAG
TCTGCTTATGACGTGGCAGACATGCTGAAGCAGTATTTTCGAGATCTTCCTGAGCCACTAATGACGAACA
AACTCTCGGAAACCTTTCTACAGATCTACCAATATGTGCCCAAGGACCAGCGCCTGCAGGCCATCAAGGC
TGCCATCATGCTGCTGCCTGACGAGAACCGGGAGGTTCTGCAGACCCTGCTTTATTTCCTGAGCGATGTC
ACAGCAGCCGTAAAAGAAAACCAGATGACCCCAACCAACCTGGCCGTGTGCTTAGCGCCTTCCCTCTTCC
ATCTCAACACCCTGAAGAGAGAGAATTCCTCTCCCAGGGTAATGCAAAGAAAACAAAGTTTGGGCAAACC
AGATCAGAAAGATTTGAATGAAAACCTAGCTGCCACTCAAGGGCTGGCCCATATGATCGCCGAGTGCAAG
AAGCTTTTCCAGGTTCCCGAGGAAATGAGCCGATGTCGTAATTCCTATACCGAACAAGAGCTGAAGCCCC
TCACTCTGGAAGCACTCGGGCACCTGGGTAATGATGACTCAGCTGACTACCAACACTTCCTCCAGGACTG
TGTGGATGGCCTGTTTAAAGAAGTCAAAGAGAAGTTTAAAGGCTGGGTCAGCTACTCCACTTCGGAGCAG
GCTGAGCTGTCCTATAAGAAGGTGAGCGAAGGACCCCCTCTGAGGCTTTGGAGGTCAGTCATTGAAGTCC
CTGCTGTGCCAGAGGAAATCTTAAAGCGCCTACTTAAAGAACAGCACCTCTGGGATGTAGACCTGTTGGA
TTCAAAAGTGATCGAAATTCTGGACAGCCAAACTGAAATTTACCAGTATGTCCAAAACAGTATGGCACCT
CATCCTGCTCGAGACTACGTTGTTTTAAGAACCTGGAGGACTAATTTACCCAAAGGAGCCTGTGCCCTTT
TACTAACCTCTGTGGATCACGATCGCGCACCTGTGGTGGGTGTGAGGGTTAATGTGCTCTTGTCCAGGTA
TTTGATTGAACCCTGTGGGCCAGGAAAATCCAAACTCACCTACATGTGCAGAGTTGACTTAAGGGGCCAC
ATGCCAGAATGGTACACAAAATCTTTTGGACATTTGTGTGCAGCTGAAGTTGTAAAGATCCGGGATTCCT
TCAGTAACCAGAACACTGAAACCAAAGACACCAAATCTAGGTGA

Translation (1017 aa):
MKLEISPHRKRSDDSDEDEPCAISGKWTFQRDSKRWSRLEEFDVFSPKQDLVPGSPDDSHPKDGPSPGGT
LMDLSERQEVSSVRSLSSTGSLPSHAPPSEDAATPRTNSVISVCSSSNLAGNDDSFGSLPSPKELSSFSF
SMKGHEKTAKSKTRSLLKRMESLKLKSSHHSKHKAPSKLGLIISGPILQEGMDEEKLKQLNCVEISALNG
NRINVPMVRKRSVSNSTQTSSSSSQSETSSAVSTPSPVTRTRSLSACNKRVGMYLEGFDPFNQSTFNNVV
EQNFKNRESYPEDTVFYIPEDHKPGTFPKALTNGSFSPSGNNGSVNWRTGSFHGPGHISLRRENSSDSPK
ELKRRNSSSSMSSRLSIYDNVPGSILYSSSGDLADLENEDIFPELDDILYHVKGMQRIVNQWSEKFSDEG
DSDSALDSVSPCPSSPKQIHLDVDNDRTTPSDLDSTGNSLNEPEEPSEIPERRDSGVGASLTRSNRHRLR
WHSFQSSHRPSLNSVSLQINCQSVAQMNLLQKYSLLKLTALLEKYTPSNKHGFSWAVPKFMKRIKVPDYK
DRSVFGVPLTVNVQRTGQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQMNEGAIDCVNYEGQ
SAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQAIKAAIMLLPDENREVLQTLLYFLSDV
TAAVKENQMTPTNLAVCLAPSLFHLNTLKRENSSPRVMQRKQSLGKPDQKDLNENLAATQGLAHMIAECK
KLFQVPEEMSRCRNSYTEQELKPLTLEALGHLGNDDSADYQHFLQDCVDGLFKEVKEKFKGWVSYSTSEQ
AELSYKKVSEGPPLRLWRSVIEVPAVPEEILKRLLKEQHLWDVDLLDSKVIEILDSQTEIYQYVQNSMAP
HPARDYVVLRTWRTNLPKGACALLLTSVDHDRAPVVGVRVNVLLSRYLIEPCGPGKSKLTYMCRVDLRGH
MPEWYTKSFGHLCAAEVVKIRDSFSNQNTETKDTKSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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