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Report for CCDS38846.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38846.1 Public Mus musculus 4 Uqcrh 23 108 98 CCDS HistoryNCBI Gene:66576Re-query CCDS DB by CCDS ID:38846.1Re-query CCDS DB by GeneID:66576See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38846.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078676.5 ENSMUSP00000077744.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078676.5Link to Ensembl Protein Viewer:ENSMUSP00000077744.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000078676Re-query CCDS DB by Protein ID:ENSMUSP00000077744
Original member Current member NCBI NM_025641.3 NP_079917.1 Accepted alive Link to Nucleotide Sequence:NM_025641.3Link to Protein Sequence:NP_079917.1Re-query CCDS DB by Nucleotide ID:NM_025641Re-query CCDS DB by Protein ID:NP_079917Link to BLAST:NP_079917.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079917.1 89 P99028 89 100% 0 0

Chromosomal Locations for CCDS 38846.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 116067140 116067172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116069863 116070024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116070737 116070757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116074916 116074969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (270 nt):
ATGGGACTAGAGGACGAACGAAAGATGCTCACTGGATCTGGAGACCCCAAAGAGGAAGAAGAGGAAGAAC
TAGTGGACCCCCTAACAACAGTGAGAGAGCACTGTGAACAGCTGGAGAAGTGTGTAAAGGCCCGGGAACG
ACTAGAGTTGTGTGATAATCGCGTGTCTTCCCGGTCACAGACAGAAGAGGATTGTACAGAGGAGCTCTTT
GACTTCTTGCATGCACGGGACCACTGTGTGGCCCACAAGCTCTTTAAAAACTTGAAGTAA

Translation (89 aa):
MGLEDERKMLTGSGDPKEEEEEELVDPLTTVREHCEQLEKCVKARERLELCDNRVSSRSQTEEDCTEELF
DFLHARDHCVAHKLFKNLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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