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Report for CCDS37228.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37228.1 Public Mus musculus 15 Sp7 23 108 98 CCDS HistoryNCBI Gene:170574Re-query CCDS DB by CCDS ID:37228.1Re-query CCDS DB by GeneID:170574See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37228.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078508.6 ENSMUSP00000077596.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078508.6Link to Ensembl Protein Viewer:ENSMUSP00000077596.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000078508Re-query CCDS DB by Protein ID:ENSMUSP00000077596
Original member Current member NCBI NM_130458.4 NP_569725.1 Accepted alive Link to Nucleotide Sequence:NM_130458.4Link to Protein Sequence:NP_569725.1Re-query CCDS DB by Nucleotide ID:NM_130458Re-query CCDS DB by Protein ID:NP_569725Link to BLAST:NP_569725.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_569725.1 428 Q8VI67 428 100% 0 0

Chromosomal Locations for CCDS 37228.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 102358137 102359402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102366214 102366234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1287 nt):
ATGGCGTCCTCTCTGCTTGAGGAAGAAGCTCACTATGGCTCCAGTCCCCTGGCCATGCTGACTGCAGCCT
GCAGCAAATTTGGCGGCTCTAGCCCTCTGCGGGACTCAACAACCCTGGGGAAAGGAGGCACAAAGAAGCC
ATACGCTGACCTTTCAGCCCCCAAAACCATGGGGGACGCCTACCCAGCTCCCTTCTCAAGCACCAATGGA
CTCCTCTCTCCTGCAGGCAGTCCTCCGGCCCCAGCCTCTGGCTATGCAAATGACTACCCACCCTTCCCTC
ACTCATTTCCTGGGCCCACCGGTGCCCAAGACCCTGGGCTCCTAGTGCCTAAGGGGCACAGCTCGTCTGA
CTGCCTGCCTAGTGTCTACACTTCCCTGGATATGACTCATCCCTATGGCTCGTGGTACAAGGCAGGCATC
CACGCAGGCATCTCACCAGGTCCAGGCAACACACCTACTCCTTGGTGGGACATGCACCCTGGGGGCAACT
GGCTAGGTGGTGGTCAGGGCCAGGGTGATGGGCTGCAAGGGACACTGTCCACAGGCCCTGCCCAGCCTCC
ACTGAACCCCCAGCTGCCTACTTACCCATCTGACTTTGCTCCCCTTAACCCAGCTCCCTACCCAGCGCCC
CACCTCTTGCAACCAGGGCCCCAGCATGTCCTACCCCAAGATGTCTATAAGCCCAAGGCGGTTGGCAATA
GTGGGCAACTGGAGGGGAGTGGTGCAGCCAAACCCCCTCGGGGTGCTGGCACAGGGGGCAGCGGTGGATA
TGCGGGCAGTGGGGCAGGGCGTTCTACCTGCGACTGCCCCAACTGTCAGGAGCTAGAGCGGCTCGGGGCA
GCAGCGGCTGGGCTGAGGAAGAAGCCCATTCACAGCTGCCACATCCCTGGGTGCGGCAAGGTGTACGGCA
AGGCTTCGCATCTGAAAGCCCACTTGCGCTGGCACACTGGCGAGAGGCCTTTCGTCTGCAACTGGCTTTT
CTGCGGCAAGAGGTTCACTCGCTCTGACGAGCTGGAGCGCCACGTGCGCACTCACACCCGGGAGAAGAAG
TTCACCTGCCTGCTCTGTTCCAAGCGCTTTACCAGAAGCGACCACTTGAGCAAACATCAGCGCACCCACG
GGGAGCCAGGCCCGGGACCGCCCCCAAGTGGCCCTAAGGAGCTGGGGGAGGGTCGCAGCGTCGGGGAAGA
AGAAGCCAATCAGCCGCCCCGATCTTCCACTTCGCCTGCACCCCCAGAAAAAGCCCACGGAGGCAGCCCA
GAGCAGAGCAACCTGCTAGAGATCTGA

Translation (428 aa):
MASSLLEEEAHYGSSPLAMLTAACSKFGGSSPLRDSTTLGKGGTKKPYADLSAPKTMGDAYPAPFSSTNG
LLSPAGSPPAPASGYANDYPPFPHSFPGPTGAQDPGLLVPKGHSSSDCLPSVYTSLDMTHPYGSWYKAGI
HAGISPGPGNTPTPWWDMHPGGNWLGGGQGQGDGLQGTLSTGPAQPPLNPQLPTYPSDFAPLNPAPYPAP
HLLQPGPQHVLPQDVYKPKAVGNSGQLEGSGAAKPPRGAGTGGSGGYAGSGAGRSTCDCPNCQELERLGA
AAAGLRKKPIHSCHIPGCGKVYGKASHLKAHLRWHTGERPFVCNWLFCGKRFTRSDELERHVRTHTREKK
FTCLLCSKRFTRSDHLSKHQRTHGEPGPGPPPSGPKELGEGRSVGEEEANQPPRSSTSPAPPEKAHGGSP
EQSNLLEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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