NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS39789.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39789.1 Public Mus musculus 7 Calm3 23 108 98 CCDS HistoryNCBI Gene:12315Re-query CCDS DB by CCDS ID:39789.1Re-query CCDS DB by GeneID:12315See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39789.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019514.9 ENSMUSP00000019514.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019514.9Link to Ensembl Protein Viewer:ENSMUSP00000019514.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000019514Re-query CCDS DB by Protein ID:ENSMUSP00000019514
Original member Current member NCBI NM_007590.3 NP_031616.1 Accepted alive Link to Nucleotide Sequence:NM_007590.3Link to Protein Sequence:NP_031616.1Re-query CCDS DB by Nucleotide ID:NM_007590Re-query CCDS DB by Protein ID:NP_031616Link to BLAST:NP_031616.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031616.1 149 P0DP28 149 100% 0 0

Chromosomal Locations for CCDS 39789.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 16916948 16916976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16917075 16917210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16917386 16917492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16917585 16917728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16919635 16919665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16923841 16923843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (450 nt):
ATGGCTGACCAGCTGACTGAGGAACAGATTGCAGAGTTCAAGGAAGCCTTCTCCCTCTTCGACAAGGATG
GAGATGGCACCATTACCACCAAGGAGCTGGGGACTGTGATGAGATCGCTGGGACAGAACCCCACTGAGGC
GGAGCTGCAGGACATGATTAATGAGGTGGATGCTGATGGCAATGGGACCATTGACTTCCCAGAGTTCTTG
ACCATGATGGCCAGAAAGATGAAGGATACAGACAGCGAGGAGGAGATACGAGAGGCCTTCCGTGTCTTTG
ACAAGGATGGGAATGGCTATATTAGCGCTGCCGAGCTGCGTCACGTCATGACGAACCTGGGGGAGAAGCT
GACAGATGAGGAAGTGGATGAGATGATCCGAGAGGCCGACATTGATGGAGATGGCCAGGTCAATTATGAA
GAGTTTGTACAGATGATGACTGCGAAGTGA

Translation (149 aa):
MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL
TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE
EFVQMMTAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH