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Report for CCDS17211.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17211.1 Public Mus musculus 2 Lime1 23 108 98 CCDS HistoryNCBI Gene:72699Re-query CCDS DB by CCDS ID:17211.1Re-query CCDS DB by GeneID:72699See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17211.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048077.11 ENSMUSP00000045010.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048077.11Link to Ensembl Protein Viewer:ENSMUSP00000045010.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000048077Re-query CCDS DB by Protein ID:ENSMUSP00000045010
Original member Current member NCBI NM_023684.2 NP_076173.1 Accepted alive Link to Nucleotide Sequence:NM_023684.2Link to Protein Sequence:NP_076173.1Re-query CCDS DB by Nucleotide ID:NM_023684Re-query CCDS DB by Protein ID:NP_076173Link to BLAST:NP_076173.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076173.1 269 Q9EQR5 269 100% 0 0

Chromosomal Locations for CCDS 17211.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 181382217 181382314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181382487 181382544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181382616 181382703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181382799 181383160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181383258 181383461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (810 nt):
ATGAGGCCACCAGTGCCTTCAGCCCCACTAGCTCTCTGGGTCCTGGGCTGCTTCTCCCTGCTCCTTTGGC
TATGGGCACTGTGCACAGCCTGCCACAGGAAGAGAGCTCAGAGGCAGCAAACTGGGCTGCAGGACAGTTT
GGTACCAGTGGAAATGCCACTGCTGAGACAGACCCACCTCTGCTCCCTCAGCAAGTCTGACACCAGACTG
CATGAGCTGCACCGAGGCCCACGCTCCAGCATAGCCCCACGGCCTGCTAGCATGGATCTTCTGCATCCAC
GCTGGCTAGAGATGTCCAGGGGCAGCACCAGGTCTCAGGTACCCAACTCTGCCTTCCCACCACGGCAGCT
GCCCAGGGCCCCTCCTGCTGCTCCTGCAACTGCACCTTCTACTAGCTCTGAGGCCACTTATTCCAATGTG
GGGCTGGCTGCAATTCCCAGGGCCAGCCTGGCTGCTAGCCCTGTGGTGTGGGCTGGAACACAGCTGACCA
TTAGTTGTGCCAGGCTTGGTCCTGGGGCCGAATATGCCTGCATCCAGAAGCACAAAGGGACAGAGCAAGG
CTGCCAAGAATTGCAGCAGAAGGCTAAGGTGATCCCAGCTACTCAGATGGACGTCCTATACTCTAGGGTT
TGCAAGCCTAAAAGAAGAGACCCAAGACCCGTCACAGACCAGCTGAACCTGCAGGATGGGAGAACAAGTC
TGCCGCTTGGGAGTGATGTGGAGTACGAGGCCATCAATCTCAGGGGCCAGGATATGAAGCAAGGGCCCTT
AGAAAATGTGTATGAAAGCATCAAGGAGATGGGCCTGTGA

Translation (269 aa):
MRPPVPSAPLALWVLGCFSLLLWLWALCTACHRKRAQRQQTGLQDSLVPVEMPLLRQTHLCSLSKSDTRL
HELHRGPRSSIAPRPASMDLLHPRWLEMSRGSTRSQVPNSAFPPRQLPRAPPAAPATAPSTSSEATYSNV
GLAAIPRASLAASPVVWAGTQLTISCARLGPGAEYACIQKHKGTEQGCQELQQKAKVIPATQMDVLYSRV
CKPKRRDPRPVTDQLNLQDGRTSLPLGSDVEYEAINLRGQDMKQGPLENVYESIKEMGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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