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Report for CCDS38157.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38157.1 Public Mus musculus 2 Cerkl 23 108 98 CCDS HistoryNCBI Gene:228094Re-query CCDS DB by CCDS ID:38157.1Re-query CCDS DB by GeneID:228094See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38157.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000143974.1 ENSMUSP00000114325.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000143974.1Link to Ensembl Protein Viewer:ENSMUSP00000114325.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000143974Re-query CCDS DB by Protein ID:ENSMUSP00000114325
Original member Current member NCBI NM_001048176.1 NP_001041641.1 Accepted alive Link to Nucleotide Sequence:NM_001048176.1Link to Protein Sequence:NP_001041641.1Re-query CCDS DB by Nucleotide ID:NM_001048176Re-query CCDS DB by Protein ID:NP_001041641Link to BLAST:NP_001041641.1

Chromosomal Locations for CCDS 38157.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 79332575 79332656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79333479 79333657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79338541 79338637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79341293 79341401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79341487 79341512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79342162 79342221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79342303 79342480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79343217 79343291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79354922 79355064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79361324 79361387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79368680 79368811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79392943 79393185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79428702 79428891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1578 nt):
ATGTTCCGGGGGAGACGCAGGAGCCGGGTGGGCGCCCTGGAGGAGGCGCCTCCGGAGAACCCAAAGGCAG
CTGCTGAACCCGAGCGGGTTTTGCTGCGTGGCATCTTCGAGATCCGGAGGGAAAGCTGCGATGTGGCGTT
GGGCGAGCGGGCCCTGCGGTGGCGACGCATCCAGCCCGAGCTCCCGGCTGGTGGCACCAGGCATGATCTG
CTGAGCAAAGAAGAGTCCCTAGAACTTGAAGACATCTTCTCAGTGAAGCTGAAGCGGCGTTGCTGGGCCA
AGCATCCAGGCAGAGACACACTGCTGGGCATAACGCTTTTCATCTGCTTGAAGGAGCAACGGAACAAACT
AAAGGACTCCACGCTGGATCTTATTAACTTCAGTGAAGACCACTGTGACATATGGTTTAGACAGTTCAAG
AAAATCTTGGATGGTTTCACAAGCAGGCCCAAGGCTCTCAAGATCCTCCTCAACCCCCAGAGTCACAGAA
AGGAGTCTGTCCACGTCTATTACGAGAAGGTGGAGCCTCTGCTGAAGCTTGCGGGCATAGAGACTGATGT
GACAATAACAGAATATGAAGGGCATGCCCTGTCTCTGCTTGACGAATGTGAACTCCGAGGATTTGATGGT
GTTGTCTGTGTTGGTGGAGATGGATCTGCGAGTGAGGCCGCCCGCGCTTTGCTCCTCAGAGCTCAGAAGA
ACGCGGGAGTGGAGATGGACTGCATCCCGACTCTCGTTGGAGCAGAGCTTCCTCTTGGCTTCATTCCAGC
AGGATCTACTAACGCACTGGCACATTCTCTCTTTGGAACTCCTCACGTGGTGACTGCAACCATGCATATT
ATACTAGGTCACATACGGTCAGTGGATGTCTGCACCTTTAGCTCTGCTGGCAAGCTTCTTTGCTTTGGGT
TCTCAGCCATGTTTGGCTTTGGTGGAAGGACCTTGGCTCTGGCAGAGAAATACCGATGGATGTCCCCCAG
TCAGCGAAGAGACTTTGCTATAATCAAAGCACTGGCCAAACTTAAGCCAGAGGACTGCAAAATATCATTT
TTACTAGCAGGTTGTTCTCAGAATAAACAAGAAAGAAAATCACAGAGATCTGCAGAATCTGACTGTGGTG
GTCACTGGCAAACCATCCAGGGGCAGTTCTTGAACATCAGCATCATGGCAATGCCCTGTCCATGTTCAAT
GGCACCCAGAGGCTTTACACCTGACACCAGATTACATAATGGAAGCATGGCTCTTAGGGTTGTCCGGAAC
ACCACTCGATCAGAATTTGTAAAGCACCTGAAAAGACACTCCAGTGTAAAGAATCAGTTCAATTTTCCCT
TTGTGGAGACTTATATCATTGAAGAAGTAAAAATTCACCCAAAGAGTAATAGCAATGGATACAGCCCACA
GGAGGAGGGTGGAAACCATACAACTGCTTCAGAACACGGGTTTCCGTGGAATGTAGATGGTGACTTAATG
GAAGCTGCATCAGAGGTTCACATTAGGCTGCACCCAAGACTGATCAGGCTCTATGGAGGAAGCCTGGAAG
AAATGAATGATTGCAAAGTAGCATGTGATTGCATATGA

Translation (525 aa):
MFRGRRRSRVGALEEAPPENPKAAAEPERVLLRGIFEIRRESCDVALGERALRWRRIQPELPAGGTRHDL
LSKEESLELEDIFSVKLKRRCWAKHPGRDTLLGITLFICLKEQRNKLKDSTLDLINFSEDHCDIWFRQFK
KILDGFTSRPKALKILLNPQSHRKESVHVYYEKVEPLLKLAGIETDVTITEYEGHALSLLDECELRGFDG
VVCVGGDGSASEAARALLLRAQKNAGVEMDCIPTLVGAELPLGFIPAGSTNALAHSLFGTPHVVTATMHI
ILGHIRSVDVCTFSSAGKLLCFGFSAMFGFGGRTLALAEKYRWMSPSQRRDFAIIKALAKLKPEDCKISF
LLAGCSQNKQERKSQRSAESDCGGHWQTIQGQFLNISIMAMPCPCSMAPRGFTPDTRLHNGSMALRVVRN
TTRSEFVKHLKRHSSVKNQFNFPFVETYIIEEVKIHPKSNSNGYSPQEEGGNHTTASEHGFPWNVDGDLM
EAASEVHIRLHPRLIRLYGGSLEEMNDCKVACDCI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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