NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, August 27, 2024, starting at 8:00 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4351.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4351.3 Public Homo sapiens 5 C1QTNF2 24 110 108 CCDS HistoryNCBI Gene:114898Re-query CCDS DB by CCDS ID:4351.3See the combined annotation on chromosome 5 in Sequence Viewer

Public Note for CCDS 4351.2
The coding region has been updated to shorten the N-terminus to one that is better supported by available ribosome profiling data. The presence of a signal peptide in the shortened CDS is consistent with other members of the C1QTNF family.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 4351.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000652664.2 ENSP00000498651.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000652664.2Link to Ensembl Protein Viewer:ENSP00000498651.1Re-query CCDS DB by Nucleotide ID:ENST00000652664Re-query CCDS DB by Protein ID:ENSP00000498651
Original member Current member NCBI NM_031908.6 NP_114114.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031908.6Link to Protein Sequence:NP_114114.3Re-query CCDS DB by Nucleotide ID:NM_031908Re-query CCDS DB by Protein ID:NP_114114Link to BLAST:NP_114114.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_114114.3 285 Q9BXJ5 285 100% 0 0

Chromosomal Locations for CCDS 4351.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 160349168 160349781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 160354768 160355011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (858 nt):
ATGATCCCCTGGGTGCTCCTGGCCTGTGCCCTCCCCTGTGCTGCTGACCCACTGCTTGGCGCCTTTGCTC
GCAGGGACTTCCGGAAAGGCTCCCCTCAACTGGTCTGCAGCCTGCCTGGCCCCCAGGGCCCACCCGGCCC
CCCAGGAGCCCCAGGGCCCTCAGGAATGATGGGACGAATGGGCTTTCCTGGCAAAGACGGCCAAGATGGA
CACGACGGCGACCGGGGGGACAGCGGAGAGGAAGGTCCACCTGGCCGGACAGGTAACCGGGGAAAGCCAG
GACCAAAGGGCAAAGCCGGGGCCATTGGGCGGGCTGGCCCCCGTGGCCCCAAGGGGGTCAACGGTACCCC
CGGGAAGCATGGCACACCAGGCAAGAAGGGGCCCAAGGGCAAGAAGGGGGAGCCAGGCCTCCCAGGCCCC
TGCAGCTGTGGCAGTGGCCATACCAAGTCAGCTTTCTCGGTGGCAGTGACCAAGAGCTACCCACGGGAGC
GGCTGCCCATCAAGTTTGACAAGATTCTGATGAACGAGGGTGGCCACTACAATGCTTCCAGCGGCAAGTT
CGTCTGCGGCGTGCCTGGGATCTACTACTTCACCTACGACATCACGCTGGCCAACAAGCACCTGGCCATC
GGCCTGGTGCACAACGGCCAGTACCGCATCCGGACCTTTGATGCCAACACCGGCAACCACGATGTGGCCT
CAGGCTCCACCATCCTGGCTCTCAAGCAGGGTGACGAAGTTTGGCTGCAGATCTTCTACTCAGAGCAGAA
CGGGCTCTTCTATGACCCTTACTGGACAGACAGCCTCTTTACGGGCTTCCTAATCTATGCCGACCAGGAT
GACCCCAACGAGGTATAG

Translation (285 aa):
MIPWVLLACALPCAADPLLGAFARRDFRKGSPQLVCSLPGPQGPPGPPGAPGPSGMMGRMGFPGKDGQDG
HDGDRGDSGEEGPPGRTGNRGKPGPKGKAGAIGRAGPRGPKGVNGTPGKHGTPGKKGPKGKKGEPGLPGP
CSCGSGHTKSAFSVAVTKSYPRERLPIKFDKILMNEGGHYNASSGKFVCGVPGIYYFTYDITLANKHLAI
GLVHNGQYRIRTFDANTGNHDVASGSTILALKQGDEVWLQIFYSEQNGLFYDPYWTDSLFTGFLIYADQD
DPNEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH