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Report for CCDS11966.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11966.2 Public Homo sapiens 18 ALPK2 24 110 108 CCDS HistoryNCBI Gene:115701Re-query CCDS DB by CCDS ID:11966.2See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 11966.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361673.4 ENSP00000354991.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361673.4Link to Ensembl Protein Viewer:ENSP00000354991.3Re-query CCDS DB by Nucleotide ID:ENST00000361673Re-query CCDS DB by Protein ID:ENSP00000354991
Original member Current member NCBI NM_052947.4 NP_443179.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_052947.4Link to Protein Sequence:NP_443179.3Re-query CCDS DB by Nucleotide ID:NM_052947Re-query CCDS DB by Protein ID:NP_443179Link to BLAST:NP_443179.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_443179.3 2170 Q86TB3 2170 100% 0 0

Chromosomal Locations for CCDS 11966.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 58481823 58482039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 58498049 58498097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 58503931 58504148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 58514993 58515081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 58516908 58517182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 58523806 58523841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 58523935 58524062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 58529091 58529238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 58534834 58538224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 58578814 58580548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 58607322 58607439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 58611689 58611797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (6513 nt):
ATGAAAGACTCCGAAGGGCCCCAGAGGCCCCCGCTGTGTTTTTTATCTACATTGCTTTCCCAGAAGGTTC
CTGAGAAGTCAGACGCTGTGCTTCGCTGCATAATATCTGGTCAGCCCAAGCCAGAGGTAACTTGGTATAA
GAATGGTCAGGCCATCGATGGGAGTGGCATTATTTCCAACTATGAATTCTTTGAGAATCAGTATATTCAT
GTGTTACATCTCTCTTGCTGTACCAAAAATGATGCTGCTGTCTATCAAATCTCGGCTAAAAACTCTTTTG
GAATGATCTGTTGTTCTGCTTCCGTTGAGGTTGAGTGCTCATCAGAGAACCCACAATTGTCTCCTAACCT
GGAAGATGACAGGGACAGGGGTTGGAAACATGAAACAGGGACACATGAAGAAGAAAGGGCAAATCAGATT
GATGAGAAGGAACATCCTTATAAGGAAGAAGAAAGCATCTCCCCGGGCACTCCCAGGTCAGCTGACTCCT
CCCCCTCCAAATCCAACCATTCACTCTCCCTCCAGTCATTGGGCAATCTTGACATTAGTGTGTCCAGTTC
TGAAAATCCTTTGGGTGTTAAAGGAACAAGGCACACTGGAGAGGCTTATGATCCAAGTAACACAGAAGAA
ATTGCAAATGGGTTGCTTTTTCTTAATTCAAGTCATATTTATGAAAAACAAGACAGATGTTGCCACAAGA
CAGTGCATTCCATGGCATCAAAGTTCACGGATGGTGACCTGAACAATGATGGTCCTCATGATGAAGGCTT
ACGCTCTAGTCAGCAAAATCCCAAAGTACAGAAATACATTAGCTTCAGCCTCCCGCTATCTGAGGCAACT
GCACACATTTACCCAGGTGACAGTGCCGTGGCCAACAAACAACCCAGCCCACAGCTTTCCAGTGAAGACT
CTGACAGTGACTATGAACTTTGCCCAGAGATAACCCTAACCTACACCGAGGAGTTTTCAGATGATGACCT
GGAGTATCTGGAATGTTCTGATGTTATGACGGATTACTCTAATGCAGTTTGGCAAAGGAACCTGCTGGGG
ACTGAGCATGTTTTTTTATTAGAAAGCGATGACGAAGAGATGGAATTCGGTGAGCATTGCCTGGGTGGGT
GTGAGCATTTCCTCAGTGGAATGGGTTGTGGGTCTCGGGTGTCGGGTGACGCTGGGCCTATGGTTGCCAC
TGCTGGCTTCTGTGGTCATCACTCACAACCCCAAGAAGTTGGGGTGAGGAGCAGCAGAGTCTCCAAGCAC
GGTCCCTCATCCCCACAAACAGGGATGACTCTCATTTTGGGACCTCACCAGGATGGAACGTCTTCAGTGA
CAGAACAGGGGAGATATAAACTCCCCACTGCTCCCGAGGCTGCTGAAAATGATTATCCAGGAATTCAAGG
AGAAACCAGAGACAGCCACCAAGCAAGAGAGGAATTTGCCAGTGACAATCTGCTCAACATGGATGAATCA
GTAAGAGAGACAGAGATGAAGCTCTTGTCTGGTGAGTCAGAAAACTCAGGGATGAGCCAGTGTTGGGAGA
CGGCAGCTGACAAGAGAGTGGGGGGAAAGGACTTATGGAGCAAGAGGGGTTCAAGGAAATCTGCCAGGGT
GAGGCAGCCGGGAATGAAGGGAAATCCCAAGAAGCCGAATGCCAACCTGAGAGAAAGTACAACAGAAGGT
ACCCTTCATCTCTGCTCTGCCAAAGAATCTGCTGAGCCCCCACTAACCCAGAGTGATAAAAGAGAGACTT
CTCACACCACAGCAGCAGCGACTGGTCGGAGTTCCCATGCTGATGCAAGAGAATGTGCTATTTCAACCCA
GGCAGAGCAAGAAGCAAAAACCCTTCAAACTTCAACAGACTCAGTCTCCAAAGAAGGCAACACAAATTGC
AAGGGAGAAGGCATGCAAGTTAATACTCTATTTGAAACAAGCCAGGTTCCAGACTGGAGTGATCCTCCTC
AGGTACAAGTTCAGGAAACAGTCAGAGAGACAATCTCTTGCAGCCAGATGCCAGCTTTCTCAGAGCCTGC
TGGGGAGGAGTCCCCATTCACTGGGACCACAACAATTTCCTTCTCAAACTTAGGAGGGGTCCACAAGGAA
AATGCATCATTAGCTCAACACTCGGAGGTCAAACCCTGTACCTGTGGTCCACAGCATGAAGAAAAACAAG
ACAGAGATGGCAACATACCTGACAATTTCAGGGAAGACCTAAAATATGAGCAGAGCATCTCAGAAGCCAA
TGATGAGACTATGTCCCCAGGTGTGTTCTCAAGGCATCTCCCCAAGGATGCTCGTGCTGACTTCAGGGAG
CCTGTGGCTGTCTCTGTTGCTTCCCCTGAACCCACAGATACTGCCCTCACCCTGGAAAATGTGTGTGATG
AGCCAAGGGACAGAGAAGCAGTGTGTGCAATGGAGTGTTTTGAGGCTGGTGACCAAGGAACGTGTTTTGA
TACCATAGATTCTCTTGTTGGGAGACCAGTTGATAAATATTCGCCTCAAGAAATTTGCTCTGTAGATACG
GAACTGGCAGAAGGTCAAAACAAAGTATCTGATTTATGTTCTTCTAATGACAAGACACTGGAAGTCTTTT
TTCAGACACAAGTGTCTGAGACTTCAGTGTCTACGTGCAAAAGCAGCAAGGACGGCAACTCAGTCATGTC
CCCTCTTTTTACCAGTACTTTCACCTTGAACATTTCACACACAGCTAGTGAAGGTGCCACAGGAGAAAAT
CTAGCCAAGGTGGAGAATTCCACCTACCCACTGGCCTCCACAGTACATGCTGGCCAGGAGCAGCCAAGCC
CCAGCAACTCAGGAGGGCTTGATGAAACACAGCTCCTTTCTTCTGAGAACAATCCTTTAGTGCAATTTAA
AGAAGGAGGTGACAAGAGCCCCAGTCCTAGTGCCGCAGACACCACAGCCACACCAGCCAGTTATAGTTCA
ATTGTGAGTTTTCCTTGGGAGAAGCCAACAACATTAACTGCTAATAATGAGTGCTTTCAAGCGACCAGGG
AGACTGAGGACACATCAACTGTTACCATTGCCACCGAAGTCCACCCAGCCAAATACCTTGCTGTGTCAAT
TCCTGAGGACAAGCATGCAGGTGGCACTGAGGAGAGGTTCCCTCGTGCATCCCATGAAAAGGTTTCCCAA
TTTCCTTCCCAAGTGCAGTTGGATCATATTTTAAGTGGTGCTACCATCAAATCTACAAAAGAGCTACTTT
GCAGGGCACCCAGTGTGCCAGGAGTCCCACACCATGTCCTGCAGCTCCCAGAGGGAGAGGGTTTCTGCAG
TAATTCCCCTCTTCAGGTTGATAACCTGTCTGGAGATAAGAGCCAGACTGTGGACAGAGCAGACTTTAGG
AGCTATGAAGAGAATTTCCAAGAAAGAGGAAGTGAAACAAAGCAGGGGGTCCAGCAGCAGAGCCTGTCCC
AGCAGGGTTCTCTTTCTGCACCTGATTTCCAACAAAGTTTGCCTACGACATCTGCTGCACAAGAGGAAAG
AAACTTGGTGCCCACGGCCCACTCACCCGCAAGCTCTAGGGAAGGAGCAGGGCAGCGCTCAGGTTGGGGG
ACGAGGGTCTCCGTGGTGGCTGAAACTGCTGGGGAAGAAGACAGTCAGGCTCTGAGCAACGTTCCATCTC
TCTCTGATATCCTTTTGGAAGAGTCTAAAGAATATAGACCTGGAAATTGGGAGGCAGGCAACAAGCTGAA
GATTATAACTCTAGAGGCTTCCGCTTCTGAAATCTGGCCACCACGACAACTGACAAATTCTGAGAGCAAG
GCATCAGACGGTGGTCTCATAATTCCTGACAAGGTCTGGGCTGTACCTGATAGTCTAAAGGCAGATGCTG
TTGTGCCTGAATTGGCCCCCTCTGAAATAGCAGCATTGGCTCACAGTCCAGAGGATGCTGAGTCAGCCCT
TGCTGATAGCAGAGAAAGCCATAAAGGCGAAGAGCCCACCATCAGTGTACATTGGAGAAGTCTTTCTTCC
CGGGGTTTCAGCCAACCCAGACTCCTGGAGTCATCCGTGGACCCTGTAGATGAAAAGGAGTTATCTGTCA
CAGATTCACTGTCAGCGGCTTCTGAAACTGGAGGGAAGGAAAATGTTAACAATGTGAGTCAAGACCAGGA
GGAAAAACAACTCAAGATGGATCACACTGCCTTCTTTAAAAAGTTTCTGACCTGCCCTAAAATCCTAGAG
TCCTCTGTAGATCCCATTGATGAGATAAGTGTGATAGAGTACACCAGGGCTGGAAAACCAGAGCCCTCTG
AAACCACACCACAGGGCGCCAGAGAAGGGGGTCAATCAAATGACGGAAACATGGGCCACGAAGCGGAAAT
CCAGCCGGCCATTTTGCAAGTTCCATGTCTCCAGGGAACCATTCTGAGTGAAAATAGAATCAGCAGAAGC
CAAGAAGGCAGTATGAAGCAGGAGGCTGAACAAATTCAACCTGAGGAGGCAAAAACTGCCATTTGGCAAG
TCCTGCAACCCAGCGAAGGCGGTGAAAGAATTCCAAGTGGATGTAGCATAGGCCAAATACAAGAAAGCAG
TGATGGGAGCTTAGGGGAGGCTGAGCAAAGCAAAAAGGACAAAGCAGAATTGATTTCCCCCACTTCACCT
CTTTCTAGTTGTCTTCCAATAATGACTCACGCTTCTCTTGGGGTTGACACGCACAACTCCACAGGCCAAA
TTCATGACGTCCCTGAAAATGACATAGTTGAGCCCAGAAAGCGTCAGTATGTGTTTCCTGTTTCACAGAA
AAGGGGAACTATTGAGAATGAGCGTGGGAAACCTTTGCCCTCTTCTCCTGATCTTACCAGGTTCCCTTGT
ACTTCATCTCCTGAAGGAAATGTCACAGACTTTTTGATAAGCCACAAAATGGAGGAACCTAAAATAGAGG
TGCTTCAAATTGGGGAAACCAAACCCCCAAGCTCATCTAGCTCCTCAGCGAAGACCTTGGCATTTATTTC
AGGAGAACGTGAGTTAGAGAAAGCCCCTAAATTACTGCAGGATCCATGTCAAAAGGGCACCCTGGGCTGT
GCGAAAAAGTCCAGGGAGAGAGAGAAGTCCCTGGAAGCCCGAGCAGGCAAATCGCCAGGGACCCTCACAG
CAGTGACGGGGTCAGAGGAGGTCAAGAGGAAGCCAGAAGCCCCAGGCAGTGGACATTTAGCTGAGGGAGT
AAAGAAGAAAATTTTGTCCAGGGTGGCAGCACTGAGGCTGAAACTGGAAGAAAAGGAAAATATCAGAAAG
AACTCAGCCTTTCTTAAAAAGATGCCCAAACTCGAAACATCATTATCACACACAGAAGAGAAACAAGACC
CAAAAAAGCCATCTTGCAAAAGAGAAGGAAGAGCTCCAGTATTACTGAAAAAGATCCAAGCTGAGATGTT
CCCTGAACACTCTGGAAATGTAAAATTAAGCTGCCAATTTGCAGAAATTCATGAAGATTCTACTATCTGC
TGGACAAAAGATTCAAAGTCCATAGCCCAAGTGCAGAGAAGTGCAGGGGACAACTCCACTGTTTCCTTTG
CCATCGTGCAAGCCAGTCCGAAGGACCAGGGACTCTATTACTGCTGCATCAAGAACAGCTACGGAAAAGT
GACTGCTGAATTTAACCTCACAGCTGAAGTTCTCAAACAGCTGTCAAGTCGCCAGGATACTAAAGGATGT
GAAGAGATTGAATTCAGCCAACTCATCTTCAAAGAAGACTTCCTCCATGACAGCTACTTTGGGGGCCGCC
TGCGTGGTCAGATCGCCACGGAGGAGCTGCACTTTGGAGAAGGGGTTCACCGCAAAGCCTTCCGCAGCAC
AGTGATGCACGGCCTCATGCCTGTCTTCAAACCTGGCCATGCCTGTGTGCTTAAGGTGCACAATGCCATT
GCCTATGGGACCAGAAATAATGATGAGCTCATCCAAAGGAACTACAAACTCGCTGCCCAGGAATGCTATG
TTCAAAATACTGCCAGGTATTATGCCAAGATCTACGCTGCTGAAGCACAGCCTCTGGAAGGCTTTGGAGA
AGTACCTGAGATCATTCCTATTTTTCTTATCCATCGGCCTGAGAACAATATCCCGTATGCTACAGTGGAG
GAGGAGCTGATTGGAGAATTTGTGAAGTATTCCATCAGGGATGGGAAAGAAATAAACTTCTTGAGAAGAG
AATCAGAAGCTGGTCAGAAATGTTGCACCTTCCAGCACTGGGTGTACCAGAAAACAAGTGGCTGCCTCCT
GGTGACGGACATGCAAGGTGTAGGAATGAAGCTAACTGACGTTGGCATAGCAACGCTGGCTAAAGGGTAC
AAGGGATTTAAAGGCAACTGTTCCATGACCTTCATTGATCAGTTTAAAGCACTACACCAGTGTAACAAGT
ATTGCAAAATGCTGGGACTGAAATCCCTTCAAAACAACAACCAGAAACAGAAGCAGCCGAGCATTGGGAA
AAGCAAAGTTCAAACAAACTCTATGACAATAAAGAAGGCAGGGCCTGAGACCCCAGGCGAAAAGAAAACC
TAA

Translation (2170 aa):
MKDSEGPQRPPLCFLSTLLSQKVPEKSDAVLRCIISGQPKPEVTWYKNGQAIDGSGIISNYEFFENQYIH
VLHLSCCTKNDAAVYQISAKNSFGMICCSASVEVECSSENPQLSPNLEDDRDRGWKHETGTHEEERANQI
DEKEHPYKEEESISPGTPRSADSSPSKSNHSLSLQSLGNLDISVSSSENPLGVKGTRHTGEAYDPSNTEE
IANGLLFLNSSHIYEKQDRCCHKTVHSMASKFTDGDLNNDGPHDEGLRSSQQNPKVQKYISFSLPLSEAT
AHIYPGDSAVANKQPSPQLSSEDSDSDYELCPEITLTYTEEFSDDDLEYLECSDVMTDYSNAVWQRNLLG
TEHVFLLESDDEEMEFGEHCLGGCEHFLSGMGCGSRVSGDAGPMVATAGFCGHHSQPQEVGVRSSRVSKH
GPSSPQTGMTLILGPHQDGTSSVTEQGRYKLPTAPEAAENDYPGIQGETRDSHQAREEFASDNLLNMDES
VRETEMKLLSGESENSGMSQCWETAADKRVGGKDLWSKRGSRKSARVRQPGMKGNPKKPNANLRESTTEG
TLHLCSAKESAEPPLTQSDKRETSHTTAAATGRSSHADARECAISTQAEQEAKTLQTSTDSVSKEGNTNC
KGEGMQVNTLFETSQVPDWSDPPQVQVQETVRETISCSQMPAFSEPAGEESPFTGTTTISFSNLGGVHKE
NASLAQHSEVKPCTCGPQHEEKQDRDGNIPDNFREDLKYEQSISEANDETMSPGVFSRHLPKDARADFRE
PVAVSVASPEPTDTALTLENVCDEPRDREAVCAMECFEAGDQGTCFDTIDSLVGRPVDKYSPQEICSVDT
ELAEGQNKVSDLCSSNDKTLEVFFQTQVSETSVSTCKSSKDGNSVMSPLFTSTFTLNISHTASEGATGEN
LAKVENSTYPLASTVHAGQEQPSPSNSGGLDETQLLSSENNPLVQFKEGGDKSPSPSAADTTATPASYSS
IVSFPWEKPTTLTANNECFQATRETEDTSTVTIATEVHPAKYLAVSIPEDKHAGGTEERFPRASHEKVSQ
FPSQVQLDHILSGATIKSTKELLCRAPSVPGVPHHVLQLPEGEGFCSNSPLQVDNLSGDKSQTVDRADFR
SYEENFQERGSETKQGVQQQSLSQQGSLSAPDFQQSLPTTSAAQEERNLVPTAHSPASSREGAGQRSGWG
TRVSVVAETAGEEDSQALSNVPSLSDILLEESKEYRPGNWEAGNKLKIITLEASASEIWPPRQLTNSESK
ASDGGLIIPDKVWAVPDSLKADAVVPELAPSEIAALAHSPEDAESALADSRESHKGEEPTISVHWRSLSS
RGFSQPRLLESSVDPVDEKELSVTDSLSAASETGGKENVNNVSQDQEEKQLKMDHTAFFKKFLTCPKILE
SSVDPIDEISVIEYTRAGKPEPSETTPQGAREGGQSNDGNMGHEAEIQPAILQVPCLQGTILSENRISRS
QEGSMKQEAEQIQPEEAKTAIWQVLQPSEGGERIPSGCSIGQIQESSDGSLGEAEQSKKDKAELISPTSP
LSSCLPIMTHASLGVDTHNSTGQIHDVPENDIVEPRKRQYVFPVSQKRGTIENERGKPLPSSPDLTRFPC
TSSPEGNVTDFLISHKMEEPKIEVLQIGETKPPSSSSSSAKTLAFISGERELEKAPKLLQDPCQKGTLGC
AKKSREREKSLEARAGKSPGTLTAVTGSEEVKRKPEAPGSGHLAEGVKKKILSRVAALRLKLEEKENIRK
NSAFLKKMPKLETSLSHTEEKQDPKKPSCKREGRAPVLLKKIQAEMFPEHSGNVKLSCQFAEIHEDSTIC
WTKDSKSIAQVQRSAGDNSTVSFAIVQASPKDQGLYYCCIKNSYGKVTAEFNLTAEVLKQLSSRQDTKGC
EEIEFSQLIFKEDFLHDSYFGGRLRGQIATEELHFGEGVHRKAFRSTVMHGLMPVFKPGHACVLKVHNAI
AYGTRNNDELIQRNYKLAAQECYVQNTARYYAKIYAAEAQPLEGFGEVPEIIPIFLIHRPENNIPYATVE
EELIGEFVKYSIRDGKEINFLRRESEAGQKCCTFQHWVYQKTSGCLLVTDMQGVGMKLTDVGIATLAKGY
KGFKGNCSMTFIDQFKALHQCNKYCKMLGLKSLQNNNQKQKQPSIGKSKVQTNSMTIKKAGPETPGEKKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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