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Report for CCDS25455.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25455.1 Public Mus musculus 11 Cntnap1 23 108 98 CCDS HistoryNCBI Gene:53321Re-query CCDS DB by CCDS ID:25455.1Re-query CCDS DB by GeneID:53321See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25455.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103109.3 ENSMUSP00000099398.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103109.3Link to Ensembl Protein Viewer:ENSMUSP00000099398.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103109Re-query CCDS DB by Protein ID:ENSMUSP00000099398
Original member Current member NCBI NM_016782.2 NP_058062.2 Accepted alive Link to Nucleotide Sequence:NM_016782.2Link to Protein Sequence:NP_058062.2Re-query CCDS DB by Nucleotide ID:NM_016782Re-query CCDS DB by Protein ID:NP_058062Link to BLAST:NP_058062.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058062.2 1385 O54991 1385 100% 0 0

Chromosomal Locations for CCDS 25455.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 101176258 101176327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101177234 101177335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101177423 101177616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101177999 101178146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101178236 101178439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101178815 101178999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101179494 101179637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101180310 101180571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101181232 101181381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101181638 101181809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101182203 101182309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101182433 101182552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101182883 101183086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101183214 101183370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101183455 101183582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101183852 101184037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101184531 101184752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101185047 101185286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101186509 101186862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101187000 101187127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101188263 101188356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101188509 101188754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101188864 101188911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101189367 101189659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4158 nt):
ATGATGAGTCTCCGGCTCTTCAGCATCCTGCTCGCCACGGTGGTCTCTGGAGCTTGGGGCTGGGGCTACT
ACGGTTGCAATGAGGAGCTGGTGGGGCCTCTGTATGCACGGTCTCTGGGCGCTTCTTCCTACTATGGACT
CTTTACCACAGCCCGCTTTGCCCGGCTACATGGCATCAGTGGATGGTCGCCCCGGATTGGGGACCCGAAT
CCCTGGCTGCAGATCGACTTAATGAAGAAGCATCGGATCCGGGCTGTGGCCACACAGGGAGCTTTTAATT
CTTGGGATTGGGTCACACGTTACATGCTGCTCTACGGGGACCGTGTGGACAGCTGGACACCATTCTACCA
AAAAGGGCACAATGCGACCTTCTTCGGGAATGTCAATGACTCGGCAGTGGTCCGCCATGACCTTCACTAC
CACTTTACGGCTCGCTACATCCGCATCGTGCCACTGGCCTGGAACCCACGCGGCAAGATTGGCCTGAGGC
TGGGCATCTATGGTTGTCCCTACACATCCAGCATCCTGTATTTTGACGGCGACGATGCCATCTCATACCG
CTTCCAGCGAGGCGCCAGCCAAAGTCTTTGGGACGTGTTCGCTTTTAGTTTCAAGACAGAGGAGAAGGAT
GGGCTGTTGCTGCACACCGAGGGCTCCCAGGGGGATTATGTGACGCTTGAACTGCAAGGGGCGCACCTGC
TGCTGCACATGAGCCTGGGCAGCAGTCCCATCCAGCCAAGACCTGGTCACACCACGGTGAGCCTTGGTGG
CGTTCTTAACGACCTAAGCTGGCACTATGTGCGGGTGGATCGATATGGCCGAGATGCAAATTTCACCCTG
GATGGTTACGCCCATCACTTTGTGCTCAACGGCGACTTTGAAAGGCTGAATCTTGAAAATGAGATATTCA
TCGGGGGTCTAGTGGGCGCAGCCCGTAAGAACCTGGCCTACCGCCATAACTTCCGTGGCTGCATAGAAAA
CGTGATCTACAACCGGATCAACATTGCAGAAATGGCAGTGATGCGCCATTCGCGGATCACCTTTGAGGGT
AATGTGGCTTTCCGTTGCTTGGATCCCGTTCCACACCCCATCAACTTCGGAGGCCCTCACAACTTCGTCC
AAGTGCCTGGCTTTCCACGCCGAGGACGCTTAGCCGTCTCTTTTCGTTTCCGCACCTGGGACCTCACAGG
GCTGCTCCTTTTCTCCCACTTGGGGGACGGGCTGGGTCATGTGGAGCTGATGCTTAGCGAAGGGCAAGTG
AATGTATCCATCGCGCAGACTGGCCGCAAGAAGCTTCAGTTTGCTGCTGGGTACCGCCTGAATGATGGCT
TCTGGCACGAGGTGAACTTTGTGGCACAGGAAAACCATGCAGTCATCAGTATTGATGATGTGGAAGGGGC
AGAGGTCAGGGTTTCATACCCACTGCTGATCCGCACAGGGACTTCATACTTCTTTGGTGGTTGTCCCAAA
CCAGCCAGTCGATGGGGCTGCCACTCCAACCAGACAGCATTCCATGGCTGCATGGAGCTGCTCAAGGTGG
ACGGTCAACTGGTCAACCTCACTCTGGTAGAGTTTCGGAAGCTCGGTTATTTTGCTGAGGTCCTCTTTGA
CACATGTGGCATCACAGACAGATGCAGCCCTAACATGTGTGAGCATGACGGACGATGCTACCAGTCTTGG
GATGACTTCATCTGCTACTGCGAACTTACCGGCTACAAGGGAGTTACCTGCCACGAACCATTGTACAAGG
AGTCCTGTGAGGCCTATCGGCTCAGTGGGAAATATTCTGGAAACTACACCATTGATCCTGATGGCAGTGG
ACCCCTGAAGCCGTTTGTGGTGTATTGTGACATCCGAGAGAACCGAGCGTGGACAGTTGTGCGGCATGAC
AGGCTGTGGACCACTCGAGTGACTGGTTCCAGCATGGACCGGCCCTTTCTGGGGGCCATCCAATACTGGA
ATGCCTCCTGGGAGGAAGTCAGCGCTCTGGCCAATGCTTCCCAACACTGTGAGCAGTGGATCGAGTTTTC
CTGCTACAATTCCCGGCTGCTCAACACTGCAGGAGGCTACCCCTACAGCTTTTGGATTGGCCGCAATGAG
GAACAGCATTTCTACTGGGGAGGCTCCCAGCCTGGGATCCAGCGCTGTGCCTGTGGGCTGGACCAGAGCT
GTGTGGACCCTGCACTGCACTGCAATTGTGATGCCGACCAGCCACAGTGGAGAACAGACAAGGGGCTCCT
GACCTTTGTAGACCATCTGCCTGTCACTCAGGTAGTGGTAGGTGATACAAACCGCTCAAATTCTGAAGCT
CAGTTCTTCCTGAGGCCTCTGCGCTGCTATGGTGACCGCAATTCCTGGAACACCATCTCCTTCCACACTG
GAGCTGCACTGCGTTTCCCTCCGATCCGAGCCAACCACAGCCTCGATGTCTCATTCTACTTCAGGACCTC
GGCTCCCTCGGGTGTCTTCCTAGAGAACATGGGGGGTCCTTTCTGCCGGTGGCGCCGACCTTACGTGAGA
GTGGAGCTCAACACATCCCGGGATGTGGTCTTTGCCTTTGATATTGGCAATGGGGATGAGAACCTGACAG
TGCACTCGGATGACTTTGAGTTTAACGATGATGAGTGGCATTTGGTCCGAGCTGAAATCAACGTGAAGCA
GGCCCGGCTGCGAGTGGATCACCGGCCCTGGGTGCTAAGGCCCATGCCCCTGCAGACCTACATCTGGCTG
GTGTATGACCAACCCCTCTATGTGGGATCTGCAGAGCTTAAGAGGCGCCCTTTTGTGGGCTGCTTGAGGG
CCATGCGTTTGAATGGAGTGACTCTGAACTTGGAGGGCCGTGCCAATGCCTCTGAGGGCACCTTCCCCAA
CTGCACCGGCCACTGCACCCACCCCCGGTTCCCCTGTTTCCACGGAGGACGCTGTGTGGAGCGATACAGC
TACTACACATGTGACTGTGACCTCACAGCTTTTGATGGGCCATACTGCAATCACGATATTGGTGGATTCT
TTGAGACCGGCACATGGATGCGCTATAACCTCCAGTCAGCACTGCGCTCTGCAGCCCGGGAGTTCTCACA
CATGCTGAGCCGGCCAGTGCCGGGCTATGAGCCTGGCTATGTTCCAGGCTACGACACTCCTGGTTACGTG
CCTGGATACCACGGCCCTGGGTACCGACTGCCCGAGTACCCGAGGCCCGGCCGGCCAGTGCCCGGGTATA
GGGGGCCTGTCTACAATGTTACTGGAGAGGAGGTCTCCTTCAGCTTCAGCACCAACTCTGCTCCTGCCGT
CCTGCTCTATGTCAGCTCCTTTGTACGTGACTACATGGCTGTGCTCATCAAGGAAGACGGGACCCTACAG
CTTCGGTATCAGTTGGGCACCAGTCCCTATGTGTACCAGCTAACCACCCGGCCAGTGACTGATGGTCAGC
CCCATAGTGTCAACATCACCCGGGTCTACCGAAACCTCTTTATCCAGGTGGACTACTTCCCGCTGACAGA
ACAGAAGTTCTCTCTCCTGGTGGACAGCCAGCTGGACTCACCCAAGGCCTTGTATCTAGGGCGTGTGATG
GAGACAGGAGTCATTGACCCAGAGATTCAGCGGTACAACACCCCAGGTTTCTCAGGCTGCCTGTCTGGTG
TCCGGTTCAACAATGTGGCTCCTCTCAAGACCCATTTCCGAACCCCTCGGCCCATGACTGCTGAGCTGGC
GGAGGCCATGCGGGTTCAAGGAGAACTGTCAGAATCTAACTGTGGAGCTATGCCACGCCTTGTCTCTGAG
GTGCCACCAGAACTTGATCCCTGGTACCTGCCTCCAGATTTCCCATACTACCATGACGACGGATGGATTG
CCATACTCTTAGGTTTTTTGGTGGCCTTCCTGCTGCTGGGGCTTGTGGGAATGCTGGTGCTGTTCTATCT
GCAAAATCATCGATACAAGGGCTCCTACCACACCAACGAGCCCAAGGCCACCCACGATTCCCATCCTGGC
GGCAAAGCTCCCCTCCCTCCCTCAGGCCCTGCCCAGGCCCCTGCCCCTACTCCAGCTCCCACACAGCTTC
CAACCCCAGCCCCAGCCCCAGCCCCAGCCCCAGCCTCTGGCCCAGGCCCCAGAGACCAGAACCTCCCCCA
GATCTTGGAGGAGTCCAGGTCTGAATGA

Translation (1385 aa):
MMSLRLFSILLATVVSGAWGWGYYGCNEELVGPLYARSLGASSYYGLFTTARFARLHGISGWSPRIGDPN
PWLQIDLMKKHRIRAVATQGAFNSWDWVTRYMLLYGDRVDSWTPFYQKGHNATFFGNVNDSAVVRHDLHY
HFTARYIRIVPLAWNPRGKIGLRLGIYGCPYTSSILYFDGDDAISYRFQRGASQSLWDVFAFSFKTEEKD
GLLLHTEGSQGDYVTLELQGAHLLLHMSLGSSPIQPRPGHTTVSLGGVLNDLSWHYVRVDRYGRDANFTL
DGYAHHFVLNGDFERLNLENEIFIGGLVGAARKNLAYRHNFRGCIENVIYNRINIAEMAVMRHSRITFEG
NVAFRCLDPVPHPINFGGPHNFVQVPGFPRRGRLAVSFRFRTWDLTGLLLFSHLGDGLGHVELMLSEGQV
NVSIAQTGRKKLQFAAGYRLNDGFWHEVNFVAQENHAVISIDDVEGAEVRVSYPLLIRTGTSYFFGGCPK
PASRWGCHSNQTAFHGCMELLKVDGQLVNLTLVEFRKLGYFAEVLFDTCGITDRCSPNMCEHDGRCYQSW
DDFICYCELTGYKGVTCHEPLYKESCEAYRLSGKYSGNYTIDPDGSGPLKPFVVYCDIRENRAWTVVRHD
RLWTTRVTGSSMDRPFLGAIQYWNASWEEVSALANASQHCEQWIEFSCYNSRLLNTAGGYPYSFWIGRNE
EQHFYWGGSQPGIQRCACGLDQSCVDPALHCNCDADQPQWRTDKGLLTFVDHLPVTQVVVGDTNRSNSEA
QFFLRPLRCYGDRNSWNTISFHTGAALRFPPIRANHSLDVSFYFRTSAPSGVFLENMGGPFCRWRRPYVR
VELNTSRDVVFAFDIGNGDENLTVHSDDFEFNDDEWHLVRAEINVKQARLRVDHRPWVLRPMPLQTYIWL
VYDQPLYVGSAELKRRPFVGCLRAMRLNGVTLNLEGRANASEGTFPNCTGHCTHPRFPCFHGGRCVERYS
YYTCDCDLTAFDGPYCNHDIGGFFETGTWMRYNLQSALRSAAREFSHMLSRPVPGYEPGYVPGYDTPGYV
PGYHGPGYRLPEYPRPGRPVPGYRGPVYNVTGEEVSFSFSTNSAPAVLLYVSSFVRDYMAVLIKEDGTLQ
LRYQLGTSPYVYQLTTRPVTDGQPHSVNITRVYRNLFIQVDYFPLTEQKFSLLVDSQLDSPKALYLGRVM
ETGVIDPEIQRYNTPGFSGCLSGVRFNNVAPLKTHFRTPRPMTAELAEAMRVQGELSESNCGAMPRLVSE
VPPELDPWYLPPDFPYYHDDGWIAILLGFLVAFLLLGLVGMLVLFYLQNHRYKGSYHTNEPKATHDSHPG
GKAPLPPSGPAQAPAPTPAPTQLPTPAPAPAPAPASGPGPRDQNLPQILEESRSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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