NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS6203.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6203.2 Public Homo sapiens 8 C8orf34 24 110 108 CCDS HistoryNCBI Gene:116328Re-query CCDS DB by CCDS ID:6203.2See the combined annotation on chromosome 8 in Sequence Viewer

Public Note for CCDS 6203.1
The coding region has been updated to represent an alternative 5' splicing pattern, resulting in an extended N-terminus that is more supported by the available transcript and conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 6203.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000518698.6 ENSP00000427820.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000518698.6Link to Ensembl Protein Viewer:ENSP00000427820.1Re-query CCDS DB by Nucleotide ID:ENST00000518698Re-query CCDS DB by Protein ID:ENSP00000427820
Original member Current member NCBI NM_052958.4 NP_443190.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_052958.4Link to Protein Sequence:NP_443190.2Re-query CCDS DB by Nucleotide ID:NM_052958Re-query CCDS DB by Protein ID:NP_443190Link to BLAST:NP_443190.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_443190.2 538 Q49A92-6 538 100% 0 0

Chromosomal Locations for CCDS 6203.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 68331013 68331339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68439499 68439646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68446329 68446460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68468692 68468820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68488023 68488051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68521799 68521971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68532983 68533149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68640376 68640511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68708994 68709079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68721361 68721437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68776399 68776449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68787443 68787536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68815886 68815945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68818239 68818246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1617 nt):
ATGAGTTCTCCCCTCGCCTCGGAGTTGTCTGAGTTGGCGGCGCTGCGCCCAGGCTTCCGGCTCTCAGCGC
CCCACGCGCGCGTGGCTCCCCGGGCTGCCACCCACGCCCGCGGCCGGGGCCGAGCCAGCCACGCAGGGCA
GCCGAGGCTCCGGAGCTCCTGTCCCGGCCCCAGTCCGGGTAAAAGGAGGGTTGTCCCCAGCGGAGGCGCA
CAGCCGCGCGTTCTCCCTGCACTCTCTTCGCGGTCCCATCTGTTCCCCATGGCGTCTCATCCGCAAACCC
GGATCCAGGCTTACCTGGAGAAGAACAAGATCGGTCCCCTGTTTGAGGAATTAATGACCAAGTTAATAAC
TGAGACACCTGACCAGCCAATCCCATTTCTCATTGACCATCTTCAGTCTAAACAAGGGAACCGTGGACAA
CTTCAAAGAACTTTGTCTGGATCTGCAGCTCTATGGGCAGAAAGTGAAAAATCAGAATCCAAAGGAACAA
GAAGGGATTTCAGAAGCTATGATAAACCTTGGCAATTAAATGCAAAGAAGCCTAAAAAATCAAAAAGTGA
CCTTGCTGTGTCTAATATTTCTCCACCATCACCGGACTCCAAATCATTGCCAAGGTCAGTAGAGCATCCA
AAGTGGAACTGGAGGACTAAACCACAAAGCCGTGATTTTGATGAATTGAATCACATCCTTCAGGAGAGCA
AGAAGCTGGGGAAAGCCCTTGAGAATCTCTCTCGAAGTATTGCAATTTCAGATGAACTCGATAAGGAAAC
AGTGACATTTAATTCTTCTCTTCTGAGGCCCCGTGTGATTGGAGAATGGATTGGTAGAGAAGAAAATGAT
GCTGATCCCCTAGCTGCTGAAATGCTACAGCCTCCAATTCCAAGAAGCAAAAATGACCAATGGGAAAGTG
AAGATAGTGGCTCTAGTCCTGCAGGAAGCTTAAAGATGGAGCCTAAGAACAAAGGATTAAAACAGCAGCA
ACAGCAACATAAGAAACTCCTGGCCGCAATGCTCTCTCAAGATTCTTTTGAGTCCATCCACAGCCCTACC
CCATCTGTAACAGAAGAAGATATTGATAATGAAGATGATGCAATGGAATTGCTGGAGGATCTTAATGATT
TAAGAATGGAGGGAGTAACAACCCTGGTACCTTCTGGGAGCAAATTTAACCAAGGCCGTCCTACTTACCC
TGCTGAGCCTCAGGCCAAGGTCACACTGAACATCTGTTCAAGGTGTGCCAGGCTTCAAGGAGACAACCTG
GAAGAAAGGACAGAAGAGTCACTACCAATACTCCATTCTCCAGATGAAAAAATCCCAGATTCATTCGATT
CCTTGCCTGGGACTGAAGAAGCACTAATGGAGGAGGGTGACGAATTTGAGAAAGCATCTAAACTAACAGG
ACCTGGAGAAGCCTCCAGTGGAGTAGGACACTCACTGAAAAACTACATGGAAGAAGATGAATCCTTAAAG
CAATTGCAGGTAGTTCATCAACCATGGATCTTGCCAAGTGACACAGAAAGTGAAGGAGTGGAAGCAGAAC
AAGAGAAACGTTCCGCTGATCTTCTTCTTTGCGTTCCATGCTCTTCTTGTCCTACGCTGGTCTACTCTGG
TTTGTGA

Translation (538 aa):
MSSPLASELSELAALRPGFRLSAPHARVAPRAATHARGRGRASHAGQPRLRSSCPGPSPGKRRVVPSGGA
QPRVLPALSSRSHLFPMASHPQTRIQAYLEKNKIGPLFEELMTKLITETPDQPIPFLIDHLQSKQGNRGQ
LQRTLSGSAALWAESEKSESKGTRRDFRSYDKPWQLNAKKPKKSKSDLAVSNISPPSPDSKSLPRSVEHP
KWNWRTKPQSRDFDELNHILQESKKLGKALENLSRSIAISDELDKETVTFNSSLLRPRVIGEWIGREEND
ADPLAAEMLQPPIPRSKNDQWESEDSGSSPAGSLKMEPKNKGLKQQQQQHKKLLAAMLSQDSFESIHSPT
PSVTEEDIDNEDDAMELLEDLNDLRMEGVTTLVPSGSKFNQGRPTYPAEPQAKVTLNICSRCARLQGDNL
EERTEESLPILHSPDEKIPDSFDSLPGTEEALMEEGDEFEKASKLTGPGEASSGVGHSLKNYMEEDESLK
QLQVVHQPWILPSDTESEGVEAEQEKRSADLLLCVPCSSCPTLVYSGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH