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Report for CCDS24942.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24942.1 Public Mus musculus 11 Alox12 23 108 98 CCDS HistoryNCBI Gene:11684Re-query CCDS DB by CCDS ID:24942.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24942.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000329.8 ENSMUSP00000000329.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000329.8Link to Ensembl Protein Viewer:ENSMUSP00000000329.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000000329Re-query CCDS DB by Protein ID:ENSMUSP00000000329
Original member Current member NCBI NM_007440.5 NP_031466.2 Accepted alive Link to Nucleotide Sequence:NM_007440.5Link to Protein Sequence:NP_031466.2Re-query CCDS DB by Nucleotide ID:NM_007440Re-query CCDS DB by Protein ID:NP_031466Link to BLAST:NP_031466.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031466.2 663 P39655 663 100% 0 0

Chromosomal Locations for CCDS 24942.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 70242385 70242564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70242685 70242855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70242977 70243077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70245861 70245982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70246895 70247064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70247260 70247346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70250047 70250256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70251450 70251593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70252398 70252558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70252795 70252898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70253011 70253133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70253247 70253328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70254409 70254610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70255138 70255272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1992 nt):
ATGGGCCGCTACCGCGTCCGTGTGGTCACTGGGGCCTGGCTCTTCTCCGGATCCCTCAACCTAGTGCGTT
TGTGGCTGGTTGGGGAGCACCGGGAGGCGAAACTGGAGCTGCAACTGCGGCCAGCGCGGGGCAAGGAGGA
GGAGTTTGACTTCGACGTTCCCGAGGACTTGGGGCCACTGCAGTTTGTGAAACTGCACAAACAGCACACA
GTTGTGGATGACGCCTGGTTCTGCAACCTCATCACAGTTCAGGGGCCGGGGACAAGTGCAGAGGCCGTGT
TTCCCTGCTACCGCTGGGTGCAGGGAGAGGGAATCCTGAGCCTCCCGGAGGGGACAGCCCGCCTGGCAGG
AGACAATGCCTTAGATGTCTTCCAGAAGTATCGAGAAAAGGAACTGAAGGAAAGACAACAGACCTACTGC
TGGGCCACCTGGAAAGAAGGCTTACCTCAGACAATAGCAGCGGACTGTAAGGATGACCTTCCTCCAAATA
TGAGATTCCATGAGGAGAAGAGACTGGACTTTGAATGGACGTTGAAGGCGGGGGTTCTGGAAATGGGCCT
CAAACGTGTTTATACCCTCCTGAGAAGCTGGAACCATCTGGAAGACTTTGATCAGATCTTCTGGGGCCAG
AAGAGTGCCTTGGCCGAGAAGGTTCACCAGTGTTGGCAGGAAGATGAACTCTTTGGCTACCAGTTCCTCA
ATGGCGCCAACCCCATGCTTTTGAGACGCTCCACCTCTCTGCCCTCCAGACTGGTACTGCCCTCTGGGAT
GGAGGAGCTTCAAGCTCAGTTGGAGAAAGAACTCAAGAATGGATCCCTGTTTGAAGCTGACTTTATCCTG
CTGGATGGAATTCCAGCTAATGTGATCCGAGGAGAACCACAGTACCTGGCTGCCCCTCTTGTCATGCTGA
GGATGGACCCCGGTGGGAAGCTGCTACCCATGGCTATCCAGATTCAGCCCCCTAACCCCAGCTCCCCAGC
TCCAACACTGTTCCTGCCCTCGGATCCTCCACTTGCCTGGCTCTTGGCTAAGATCTGGGTCCGAAATTCA
GATTTCCAACTGCAGGAGCTCCAATTCCATTTGCTGAACACCCATCTGGTGGCTGAGGTCATCGCTGTTG
CCACCATGAGATGCCTCCCAGGACTGCACCCTATCTTCAAGCTCCTCGTTCCACACATCCGTTACACTAT
GGAAATTAACACGCGAAGCCGGACCCAGCTCATCTCAGATGGAGGAATATTTGATCAGGTAGTGAGCACA
GGTGGAGGCGGCCATGTTCAGTTGCTTACTCGGGCAGTGGCTCAGCTGACTTACCACTCCCTCTGTCCTC
CTGATGATCTGGCTAACCGAGGCCTGCTGAGAATCCCAAGTGCTCTCTATGCTCGGGATGCTTTACAGCT
CTGGGAAGTCACTGCCAGGTATGTGAAGGGGATGGTCCATCTCTTCTACCAGAGTGATGATATTGTGAGG
GGAGACCCAGAGCTGCAGGCCTGGTGTCGGGAGATCACTGAAGTGGGGCTGTGCCATGCCCAGGACAGAG
GATTCCCTGTCTCCTTCCAGTCCCGGGCTCAGCTCTGCCATTTCCTCACCATGTGTGTTTTCACATGCAC
TGCCCAGCATGCTGCCATCAACCAGGGCCAGCTGGACTGGTATGGTTGGGTACCTAATGCTCCATGCACA
ATGAGGATGCCTCCGCCCACCAGCAAGGACGACGTGACGATGGAGACCGTGATGGGGTCGCTACCTGATG
TGCAGAAGGCCTGTCTTCAGATGACTATCACATGGCACCTGGGTCGCCTGCAGCCAGACATGGTACCTCT
AGGACACCACACAGAAAAATATTTCTCAGACCCAAGGACCAAAGCTGTGCTCAGCCAATTTCAAGCAGAT
TTGGACAATTTGGAGAAAGAGATTACAGCCCGGAATGAGCAACTTGACCTGCCTTATGAATACCTCAAGC
CCAGCCGCATAGAGAACAGTATCACCATCTGA

Translation (663 aa):
MGRYRVRVVTGAWLFSGSLNLVRLWLVGEHREAKLELQLRPARGKEEEFDFDVPEDLGPLQFVKLHKQHT
VVDDAWFCNLITVQGPGTSAEAVFPCYRWVQGEGILSLPEGTARLAGDNALDVFQKYREKELKERQQTYC
WATWKEGLPQTIAADCKDDLPPNMRFHEEKRLDFEWTLKAGVLEMGLKRVYTLLRSWNHLEDFDQIFWGQ
KSALAEKVHQCWQEDELFGYQFLNGANPMLLRRSTSLPSRLVLPSGMEELQAQLEKELKNGSLFEADFIL
LDGIPANVIRGEPQYLAAPLVMLRMDPGGKLLPMAIQIQPPNPSSPAPTLFLPSDPPLAWLLAKIWVRNS
DFQLQELQFHLLNTHLVAEVIAVATMRCLPGLHPIFKLLVPHIRYTMEINTRSRTQLISDGGIFDQVVST
GGGGHVQLLTRAVAQLTYHSLCPPDDLANRGLLRIPSALYARDALQLWEVTARYVKGMVHLFYQSDDIVR
GDPELQAWCREITEVGLCHAQDRGFPVSFQSRAQLCHFLTMCVFTCTAQHAAINQGQLDWYGWVPNAPCT
MRMPPPTSKDDVTMETVMGSLPDVQKACLQMTITWHLGRLQPDMVPLGHHTEKYFSDPRTKAVLSQFQAD
LDNLEKEITARNEQLDLPYEYLKPSRIENSITI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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