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Report for CCDS43503.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43503.1 Public Homo sapiens 6 HDDC2 24 110 108 CCDS HistoryNCBI Gene:51020Re-query CCDS DB by CCDS ID:43503.1Re-query CCDS DB by GeneID:51020See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43503.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398153.7 ENSP00000381220.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000398153.7Link to Ensembl Protein Viewer:ENSP00000381220.1Re-query CCDS DB by Nucleotide ID:ENST00000398153Re-query CCDS DB by Protein ID:ENSP00000381220
Original member Current member NCBI NM_016063.3 NP_057147.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016063.3Link to Protein Sequence:NP_057147.2Re-query CCDS DB by Nucleotide ID:NM_016063Re-query CCDS DB by Protein ID:NP_057147Link to BLAST:NP_057147.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057147.2 204 Q7Z4H3-1 204 100% 0 0

Chromosomal Locations for CCDS 43503.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 125276146 125276243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125277102 125277240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125292841 125292909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125298714 125298816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125300538 125300659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125301849 125301932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (615 nt):
ATGGCTTCGGTCTCCTCTGCGACCTTCTCGGGCCACGGGGCTCGGTCCCTACTGCAGTTCCTGCGGCTGG
TAGGGCAGCTCAAGAGAGTCCCACGAACTGGCTGGGTATACAGAAATGTCCAGAGGCCGGAGAGCGTTTC
AGATCACATGTACCGGATGGCAGTTATGGCTATGGTGATCAAAGATGACCGTCTTAACAAAGACCGATGT
GTACGCCTAGCCCTGGTTCATGATATGGCAGAATGCATCGTTGGGGACATAGCACCAGCAGATAACATCC
CCAAAGAAGAAAAACATAGGCGAGAAGAGGAAGCTATGAAGCAGATAACCCAGCTCCTACCAGAGGACCT
CAGAAAGGAGCTCTATGAACTTTGGGAAGAGTACGAGACCCAATCTAGTGCAGAAGCCAAATTTGTGAAG
CAGCTAGACCAATGTGAAATGATTCTTCAAGCATCTGAATATGAAGACCTTGAACACAAACCTGGGAGAC
TGCAAGACTTCTATGATTCCACAGCAGGAAAATTCAATCACCCTGAGATAGTCCAGCTTGTTTCTGAACT
TGAGGCAGAAAGAAGCACTAACATAGCTGCAGCTGCCAGTGAGCCACACTCCTGA

Translation (204 aa):
MASVSSATFSGHGARSLLQFLRLVGQLKRVPRTGWVYRNVQRPESVSDHMYRMAVMAMVIKDDRLNKDRC
VRLALVHDMAECIVGDIAPADNIPKEEKHRREEEAMKQITQLLPEDLRKELYELWEEYETQSSAEAKFVK
QLDQCEMILQASEYEDLEHKPGRLQDFYDSTAGKFNHPEIVQLVSELEAERSTNIAAAASEPHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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