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Report for CCDS1332.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1332.1 Public Homo sapiens 1 TDRD5 24 110 108 CCDS HistoryNCBI Gene:163589Re-query CCDS DB by CCDS ID:1332.1Re-query CCDS DB by GeneID:163589See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1332.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000294848.12 ENSP00000294848.8 Accepted alive Link to Ensembl Transcript Viewer:ENST00000294848.12Link to Ensembl Protein Viewer:ENSP00000294848.8Re-query CCDS DB by Nucleotide ID:ENST00000294848Re-query CCDS DB by Protein ID:ENSP00000294848
Original member Current member EBI ENST00000367614.5 ENSP00000356586.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367614.5Link to Ensembl Protein Viewer:ENSP00000356586.1Re-query CCDS DB by Nucleotide ID:ENST00000367614Re-query CCDS DB by Protein ID:ENSP00000356586
Original member Current member NCBI NM_001199091.2 NP_001186020.1 Accepted alive Link to Nucleotide Sequence:NM_001199091.2Link to Protein Sequence:NP_001186020.1Re-query CCDS DB by Nucleotide ID:NM_001199091Re-query CCDS DB by Protein ID:NP_001186020Link to BLAST:NP_001186020.1
Original member Current member NCBI NM_001349923.1 NP_001336852.1 Accepted alive Link to Nucleotide Sequence:NM_001349923.1Link to Protein Sequence:NP_001336852.1Re-query CCDS DB by Nucleotide ID:NM_001349923Re-query CCDS DB by Protein ID:NP_001336852Link to BLAST:NP_001336852.1
Original member Current member NCBI NM_173533.5 NP_775804.2 Accepted alive Link to Nucleotide Sequence:NM_173533.5Link to Protein Sequence:NP_775804.2Re-query CCDS DB by Nucleotide ID:NM_173533Re-query CCDS DB by Protein ID:NP_775804Link to BLAST:NP_775804.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186020.1 981 Q8NAT2-3 981 100% 0 0
NP_001336852.1 981 Q8NAT2-3 981 100% 0 0
NP_775804.2 981 Q8NAT2-3 981 100% 0 0

Chromosomal Locations for CCDS 1332.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 179592616 179592847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179593460 179593867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179595628 179595818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179618599 179618682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179621035 179621091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179630767 179630920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179634457 179634629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179635667 179635887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179639839 179640051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179640379 179640445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179650867 179651067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179652039 179652197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179662104 179662286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179663348 179663491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179669194 179669404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179690696 179690943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2946 nt):
ATGTCTGAACAAGAGCGTATACAGGAATGTCTGCGGAAGGAAATAAGGTCACTTCTCATTTCCACCAAAG
ATGGTTTGAGCCCACAGGAGTTGGAGAAGGAGTACCTTTTGATGGTTGGCAACCATCTACCACTCCGAAT
CCTTGGGTATCGGTCCACTATGGAGCTGGTATTGGACATGCCTGATGTTGTTCGTGTCTGCCCCGGTGCA
GGTGGTACTGTAATACTGAAAGCCATTCCAGATGAATCTACCAAAGGAATAGCAAGCTTAGTTGCAAAAC
AGAGGAGCAGCCATAAGCTTCGAAACTCAATGCATAAGGGAAGACCTAGTATTTATTCTGGACCGAGATC
TCATCGGCGAGTACCTTACCGAGGAAGGGTTGCCCCTATTCTTCCAGCTGTTGTGAAGAGTGAGTTGAAG
GACCTGTTGGCGTTATCTCCTGTTCTTCTTTCTGATTTTGAAAAGGCATTTGCCAAAAGATTTGGACGAT
CATTCCAATACATGCAATATGGATTTCTCTCTATGTTTGAAGTGCTTAATGCGGCTTCAGATGTCATTTC
TGTAGAGCAGACCAGAGCAGGTTCTTTGTTGATGCTAAAGAAGAGTGTAACAGAGGAAAAGCCGAGAGGA
TGTCCAGCAGGTAAAATTTTTACCCAGCCATTTAGAATGAAACAAGGGTCATACTCCACAGGCTTTCCGG
TAGCAAAGCCATGCTTTTCACAACCCACTTCAAACATGGAACCACCGAAGCAAATAATGAGCATGGAAAA
GACTTCCAAGTTAAATGTAGTGGAGACTTCAAGACTGAATCACACTGAAAAATTAAACCAGCTGGAGAAC
ACATTCAAATCAGTTATTGCACAGATTGGACCTGGAGGAACTATCAGTTCAGAACTAAAACATAAGATAA
AATTTGTTGTATCTAAGTTCCCAGAGGGTTTGTTTATTTCTAAACTGCTTGGAGAGTATGAGGTAATTTT
TAAAGAGCAACTATCACCAAAAAAATTAGGCTTCTTAAATGTGACAGAACTTGTTGGAGCTCTTAGTGAC
ATTCTCCATGTTGAGTTCAGGAAAGGACACCAAGACTTACTAGTGTTTGATGCGGATAAGAAGCCTCTAC
CACCTGTTCAGTCAGATAAGAAAATAGAAGCCAAAGCTTGTGTCTCCAGTCCACCTAGAAATTCATTGTC
TACTGCTGCTGTCAAAGAGACTGTATGGAATTGCCCTTCAAAAAAACAAAAAGAGCCACAACAGAAGATT
TGCAAGAAGCCTAATCTGGTGGTAAAGCCTTTACAGCTGCAAGTAGAAACAAACAAATCAGAGCTCAACT
TGGCAATGGCAAATCATGACATCCCGCCAGACGCTGTGCCGAACAAGAAATTATGCAGACTCCCACCATT
AGACACCAGTTCCCTCATAGGGGTCTTTGTGGAGTATATCATCTCTCCTAGTCAATTCTACATCCGGATC
TATAGCAGGGATTCGTCAGAGTTACTCGAAGACATGATGATTGAAATGCGGCGCTGTTATTCTAATCAGC
TGGTTTCTGATCGATATGTCATGCCAGAATGTTTTATTCAGCCGGGACATCTCTGTTGTGTAAGGATTTC
TGAGGATAAGTGGTGGTATCGGGTCATTATCCATCGAGTCCTTGAGAAACAGGAAGTTGAAGTGTTCTAC
CCAGACTTTGGAAATATTGGAATTGTTCAGAAGTCCTCCCTGAGGTTCCTCAAGTGCTGCTACACAAAGC
TTCCAGCTCAGGCTATCCCTTGTTCTTTGGCTTGGGTGAGACCAGTAGAGGAACACTGGACATCGAAAGC
TATTTTGCAGTTCCAGAAGTTGTGCGGTTTGAAGCCATTAGTGGGGGTAGTGGATGAATATGTAGATGGA
ATCCTTAACATTTTTTTGTGTGACACATCCTCAAACGAAGATGTCTATTTCCATCATGTCTTGAGAACAG
AGGGCCATGCTATTGTATGCCGAGAAAATATCTCTTCTAAGGGTTTCAGTGAGCTCAACCCTTTAGCTTT
ATACACGACATCCAGTGGAGGGCCAGAGGACATTGTCTTGACAGAACTGGGTTATCCTTCCCAGCAGCAC
TATTTTAATGAAGACCGAAAGATAAGTCCACAGTCAAAAGAGAGTGAGTTACGTATCTTGGATGAGATCC
CCACTGGAATGCCATGCCTGGAGTCAGTGACCATAGGTGATGATATTTGGGATGAGAACTGGTTACCTCT
ACAGGCTAAGATGGGAAAAGGAGGTGATGCTGCCTCCCATCTATTTACTGCAAGCCTTGGTGGAAAGAAT
CAGTATTCATCATGTAAAGAAATGCCACAGAAGGACTGGTGTTTTTCTACCCCTAAAGATACATGGGATG
ATTCTTGGCAGCCTTCAGGCCTTGTAAATGGAACGAAAGTAGAAGTTCATAAGCCAGAAGTACTGGGTGC
TCAGGAAAAAAATACTGGCACAAACAGGACTCAAAAGCAACTAGACATAAATGGTTCTTCAGATTCTTCC
ACACTGCCCAAATTGGAAGAATTCTGTACCTCTCTTACCCAGTCAGAGCAGTCAGCAGACGGGAGCCAGT
CTGAACCCAACAACAGTCAGACTCAGCCAAAGCAAATTCAGCTTTCCACAGCAGCACCCTGTTCAACAAC
TGCAGTGGATGATTCCGCAGAAAAGCCCTCTGGTTCTGTGGAAAGCTCACCAGAGATCCTAAAGAATGAA
GATTTTTCTAGCAGCCGTGCTATTACATTGTACAAAGACAAGCGTCAAGAATCTGTAGACCAGCTGTCTT
TGATTTTGTCTTATGAGTGCCAGATTTCTCAGAAGCTCTACATTCCTCGAAGTACAGCCACTGCTGCCTT
AGGTGCTGCCGCACGGTTAGCTACATCCAGGAGCCTCCTACACTGGTACCCCAGTGTGAAAAGGATGGAA
GCATGA

Translation (981 aa):
MSEQERIQECLRKEIRSLLISTKDGLSPQELEKEYLLMVGNHLPLRILGYRSTMELVLDMPDVVRVCPGA
GGTVILKAIPDESTKGIASLVAKQRSSHKLRNSMHKGRPSIYSGPRSHRRVPYRGRVAPILPAVVKSELK
DLLALSPVLLSDFEKAFAKRFGRSFQYMQYGFLSMFEVLNAASDVISVEQTRAGSLLMLKKSVTEEKPRG
CPAGKIFTQPFRMKQGSYSTGFPVAKPCFSQPTSNMEPPKQIMSMEKTSKLNVVETSRLNHTEKLNQLEN
TFKSVIAQIGPGGTISSELKHKIKFVVSKFPEGLFISKLLGEYEVIFKEQLSPKKLGFLNVTELVGALSD
ILHVEFRKGHQDLLVFDADKKPLPPVQSDKKIEAKACVSSPPRNSLSTAAVKETVWNCPSKKQKEPQQKI
CKKPNLVVKPLQLQVETNKSELNLAMANHDIPPDAVPNKKLCRLPPLDTSSLIGVFVEYIISPSQFYIRI
YSRDSSELLEDMMIEMRRCYSNQLVSDRYVMPECFIQPGHLCCVRISEDKWWYRVIIHRVLEKQEVEVFY
PDFGNIGIVQKSSLRFLKCCYTKLPAQAIPCSLAWVRPVEEHWTSKAILQFQKLCGLKPLVGVVDEYVDG
ILNIFLCDTSSNEDVYFHHVLRTEGHAIVCRENISSKGFSELNPLALYTTSSGGPEDIVLTELGYPSQQH
YFNEDRKISPQSKESELRILDEIPTGMPCLESVTIGDDIWDENWLPLQAKMGKGGDAASHLFTASLGGKN
QYSSCKEMPQKDWCFSTPKDTWDDSWQPSGLVNGTKVEVHKPEVLGAQEKNTGTNRTQKQLDINGSSDSS
TLPKLEEFCTSLTQSEQSADGSQSEPNNSQTQPKQIQLSTAAPCSTTAVDDSAEKPSGSVESSPEILKNE
DFSSSRAITLYKDKRQESVDQLSLILSYECQISQKLYIPRSTATAALGAAARLATSRSLLHWYPSVKRME
A


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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