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Report for CCDS40333.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40333.1 Public Mus musculus 8 Slc25a4 23 108 98 CCDS HistoryNCBI Gene:11739Re-query CCDS DB by CCDS ID:40333.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40333.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034049.4 ENSMUSP00000034049.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034049.4Link to Ensembl Protein Viewer:ENSMUSP00000034049.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000034049Re-query CCDS DB by Protein ID:ENSMUSP00000034049
Original member Current member NCBI NM_007450.5 NP_031476.3 Accepted alive Link to Nucleotide Sequence:NM_007450.5Link to Protein Sequence:NP_031476.3Re-query CCDS DB by Nucleotide ID:NM_007450Re-query CCDS DB by Protein ID:NP_031476Link to BLAST:NP_031476.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031476.3 298 P48962 298 100% 0 0

Chromosomal Locations for CCDS 40333.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 46207463 46207620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46208398 46208538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46209022 46209508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46210812 46210922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (897 nt):
ATGGGGGATCAGGCTTTGAGCTTTCTTAAGGACTTCCTGGCAGGTGGCATCGCCGCCGCCGTCTCCAAGA
CGGCGGTCGCCCCGATCGAGAGGGTCAAACTGCTGCTGCAGGTCCAGCATGCCAGCAAACAGATCAGTGC
AGAGAAGCAGTACAAAGGCATCATTGATTGTGTCGTGAGAATCCCCAAGGAGCAGGGCTTTCTCTCTTTC
TGGAGGGGTAACCTGGCCAACGTGATCCGGTACTTCCCCACTCAAGCCCTGAACTTCGCCTTCAAAGACA
AGTACAAGCAGATCTTCCTGGGAGGCGTGGATCGCCATAAGCAGTTCTGGCGCTACTTTGCTGGTAACCT
GGCCTCTGGTGGGGCAGCTGGGGCCACCTCCCTCTGCTTCGTCTACCCGCTGGACTTTGCTAGGACCAGG
CTGGCTGCCGACGTGGGCAAGGGATCTTCCCAGCGAGAATTCAATGGGCTGGGCGACTGTCTCACCAAGA
TCTTCAAGTCGGACGGCCTGAAGGGTCTCTACCAGGGTTTCAGTGTCTCTGTCCAGGGCATCATCATCTA
CAGAGCTGCCTACTTCGGAGTCTATGACACTGCCAAGGGGATGCTGCCAGACCCCAAGAATGTGCACATT
ATCGTGAGCTGGATGATTGCCCAGAGTGTGACAGCGGTGGCGGGGCTGGTGTCCTATCCGTTTGACACTG
TTCGTCGTAGGATGATGATGCAGTCTGGCCGGAAAGGGGCTGATATTATGTACACGGGGACACTTGACTG
CTGGAGGAAGATTGCAAAAGATGAAGGAGCCAACGCTTTCTTCAAAGGTGCTTGGTCCAATGTACTGAGA
GGCATGGGTGGTGCTTTTGTATTGGTATTGTATGATGAGATCAAAAAATATGTGTAA

Translation (298 aa):
MGDQALSFLKDFLAGGIAAAVSKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSF
WRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTR
LAADVGKGSSQREFNGLGDCLTKIFKSDGLKGLYQGFSVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHI
IVSWMIAQSVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTLDCWRKIAKDEGANAFFKGAWSNVLR
GMGGAFVLVLYDEIKKYV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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