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Report for CCDS30794.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30794.1 Public Homo sapiens 1 ATXN7L2 24 110 108 CCDS HistoryNCBI Gene:127002Re-query CCDS DB by CCDS ID:30794.1Re-query CCDS DB by GeneID:127002See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30794.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369870.7 ENSP00000358886.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000369870.7Link to Ensembl Protein Viewer:ENSP00000358886.3Re-query CCDS DB by Nucleotide ID:ENST00000369870Re-query CCDS DB by Protein ID:ENSP00000358886
Original member Current member NCBI NM_153340.5 NP_699171.3 Accepted alive Link to Nucleotide Sequence:NM_153340.5Link to Protein Sequence:NP_699171.3Re-query CCDS DB by Nucleotide ID:NM_153340Re-query CCDS DB by Protein ID:NP_699171Link to BLAST:NP_699171.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_699171.3 722 Q5T6C5 722 100% 0 0

Chromosomal Locations for CCDS 30794.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 109483954 109484080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109486057 109486122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109486506 109486610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109487007 109487217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109487614 109487804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109488383 109488465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109488847 109489100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109489930 109490128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109490271 109490392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109490922 109491717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109492586 109492600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2169 nt):
ATGGCGGTGCGTGAACGCGCGGCGGCAGCAATGGCCGCTCTGGAGCGGCGGGTGCCGAGTCTCGATGACT
TCGCGGGACAGAGCTGGAGCTCGTGGGTGGAGCGGGCCGACCTGCCCGCGGCTGACGGGGCTGAGCTGGA
GGAGAGTAGCAAAAACACGAAGAAGTTGGATGCCATGACCCTCATTAAAGAAGACATGTCCATCTTCGGG
CACTGCCCTGCCCATGATGACTTCTACTTGGTTGTGTGTAACCACTGCAGCCAAGTGGTGAAGCCTCAAG
CTTTCCAGAAGCACTGCGAAAGAAGACATGGGCCCCTCAGCAAGCTTTATGGCCGGGCCCCACCCCCACC
TCCAGCCCCTGCCAGCTCTCAGAAATGCCATGTAGTGAATGGGCAGGGCCCAGCTTGTAGGGCCCCAGGT
TCCACGAAAACCTCCTCCAGGGAGAAGGGCCAGGGGTCCCGGAGCCGTGGCCACCAGCCTCCTGAGAAGA
CCCAGAAGGACAACCTCTGCCAGCCAGGGGGCCTCACCAAGGACTCCCCTGGAAAACCTCCCATGGCTCC
CCCTTCTAAAGAACCTCCTGGCAGAGAGAACATCGAGATCATCCCCAGTGAGGGGTCCAGTCACTGGGCT
GAAGGCAGCCCTCCTGAAAAGGAGCCCAGTGGGACCAGGCTGCCCCCTAAAACCCACCGGAAGATGGCTC
GGAAGGAGTGCGACCTCAACAGGCAGTGTGGGGTAATAAATCCAGAGACCAAAAAGATCTGTACCCGCCT
GTTGACCTGCAAGATCCACTCAGTACACCAGCGCCGGGAAGTCCAGGGCCGGGCCAAGGACTTTGACGTG
CTGGTGGCAGAGCTGAAGGCCAACTCCCGCAAAGGGGAGTCTCCCAAGGAGAAGAGCCCAGGGCGCAAGG
AGCAAGTTCTCGAGCGCCCCTCCCAGGAGCTCCCCTCCTCAGTCCAGGTTGTAGCAGCGGTGGCTGCTCC
CAGCAGCACCTTCTCTGTTCGTGCCAAGCAGACCTACCCATACTGTGCACTGCCCAGGTCCCGGGCCTCC
TCCGAGAGTGAATTGGATGATGAAGGCCCCTGTGGTGGTGATGGGGACCCAGGCCTGTTCCCCTTCCCCA
TGCCCCGGGGTGGGACCCAGGCCTCCAGCGAAGAGAGTGAGGAGGAGGGGACATCTGACGACCTCCACCC
ACCCCCTGACTGCCATTATGCAACCCGGCCCCCACGGCCACAGGCGTTCTGCACCTTTGGGAGCCGGCTG
GTGAGCCCAGGATGCTATGTGTTTAGCCGCCGGCTGGACCGGTTCTGCTCAGCACTCAGCTCCATGCTGG
AACGGCACCTCAGCACACACATGTGGAAGAAGATCCCACCGGCAGCTGAACCTCCAGCTCACCTTGTCAA
CTCCCCGTTATCTGCTCCCCTGAGCCCATCCTCTACAGGCACCTGCCCCCGCCTTCCAGGTCCAACCCTG
AGACCTGCCTGCCCAGCCTCCATGCCCCCCACCAAGGACAACCTTGTCCCCAGCTACCCTGCAGGCTCCC
CCAGCGTGGCGGCTGCCTGTAGCCAGGCAGAGTGCATGGGCGGGAGCCAGGCTATCACCTCACCACTGCC
TGCCAACACGCCATCCCCGTCCTTCAGCAAGCTGCCGCCTTCCAAGGCCAGCAAGTCATCCAAAGGCAAG
GACGGGGTGGAGGTGGAGGCCCCTTCTCGAAAGCGGAAGTTATCCCCTGGCCCTACCACTCTTAAACGGA
CCTGCATCCTGGAGCCCACTGGAAAAGGGAAACCCTCTGGCTGTAGGGGCCTCTCGGCCAAAACTAAAAC
AGCCCTGAGCATGGGGCTTAATGGGACAATGGGGCCAAGAGTGAAGCGGGCAGGGCCCCTGGACTGTCGT
GGCTCCCCTCATCAGCTCCCCACACCAGTCAAGGCTTCTCAGCTGGAGAACCGGGGAGCAGCTGGACACC
CAGCCAAGGCCCTGCCAACCAACTGCCTCTCTGAGGAGGAGGTGGCCAAGAAGCGGAAAAACCTGGCCAC
TTATTGCCGGCCAGTGAAGGCCAAGCACTGTCAGGCTGGTGCCCCTGCTGATGTGGCCTGCTCTGTGCGC
CGCAAGAAGCCAGGCCCGGCCCTGGCCTTTGAGGAGAAGTGCTCTACACTGAAGTCAAAAGCCCATTAA

Translation (722 aa):
MAVRERAAAAMAALERRVPSLDDFAGQSWSSWVERADLPAADGAELEESSKNTKKLDAMTLIKEDMSIFG
HCPAHDDFYLVVCNHCSQVVKPQAFQKHCERRHGPLSKLYGRAPPPPPAPASSQKCHVVNGQGPACRAPG
STKTSSREKGQGSRSRGHQPPEKTQKDNLCQPGGLTKDSPGKPPMAPPSKEPPGRENIEIIPSEGSSHWA
EGSPPEKEPSGTRLPPKTHRKMARKECDLNRQCGVINPETKKICTRLLTCKIHSVHQRREVQGRAKDFDV
LVAELKANSRKGESPKEKSPGRKEQVLERPSQELPSSVQVVAAVAAPSSTFSVRAKQTYPYCALPRSRAS
SESELDDEGPCGGDGDPGLFPFPMPRGGTQASSEESEEEGTSDDLHPPPDCHYATRPPRPQAFCTFGSRL
VSPGCYVFSRRLDRFCSALSSMLERHLSTHMWKKIPPAAEPPAHLVNSPLSAPLSPSSTGTCPRLPGPTL
RPACPASMPPTKDNLVPSYPAGSPSVAAACSQAECMGGSQAITSPLPANTPSPSFSKLPPSKASKSSKGK
DGVEVEAPSRKRKLSPGPTTLKRTCILEPTGKGKPSGCRGLSAKTKTALSMGLNGTMGPRVKRAGPLDCR
GSPHQLPTPVKASQLENRGAAGHPAKALPTNCLSEEEVAKKRKNLATYCRPVKAKHCQAGAPADVACSVR
RKKPGPALAFEEKCSTLKSKAH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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