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Report for CCDS5881.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
5881.1 |
Public |
Homo sapiens |
7 |
CLCN1 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:1180](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:5881.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 7 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 5881.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000343257.7 |
ENSP00000339867.2 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000343257.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000339867.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000343257](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000339867](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_000083.3 |
NP_000074.3 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_000083.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_000074.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_000083](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_000074](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_000074.3](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_000074.3 |
988 |
P35523 |
988 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 5881.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2967 nt): ATGGAGCAATCCCGGTCACAGCAGCGTGGGGGTGAACAAAGCTGGTGGGGTAGTGACCCCCAGTACCAGT ATATGCCCTTTGAACACTGCACCAGCTACGGACTGCCCTCTGAGAATGGGGGCCTCCAGCACAGGCTCCG GAAGGATGCAGGCCCCCGCCACAACGTCCACCCCACACAGATTTATGGCCATCACAAAGAACAATTCTCA GACAGGGAGCAGGACATAGGGATGCCCAAGAAGACAGGCTCCAGTTCTACCGTGGACAGCAAGGATGAGG ATCACTATTCTAAATGTCAAGATTGTATCCACCGCCTGGGACAGGTGGTGAGAAGAAAATTAGGGGAAGA CGGGATCTTTCTGGTGCTTCTGGGACTGCTGATGGCTCTGGTCAGCTGGAGCATGGACTACGTCAGTGCC AAAAGCCTTCAGGCCTACAAGTGGTCCTACGCGCAGATGCAGCCCAGCCTTCCTCTGCAGTTCCTGGTCT GGGTCACCTTCCCACTAGTCCTCATCCTCTTCAGCGCCCTCTTCTGCCACCTCATCTCTCCCCAGGCTGT TGGCTCTGGAATCCCCGAAATGAAGACAATACTTCGTGGGGTTGTCCTGAAGGAATACCTCACAATGAAA GCCTTTGTGGCCAAGGTTGTCGCCCTGACTGCGGGCCTGGGCAGTGGCATCCCCGTGGGGAAAGAGGGCC CCTTCGTCCACATTGCCAGCATCTGTGCTGCTGTCCTCAGCAAATTCATGTCTGTGTTCTGCGGGGTATA TGAGCAGCCATACTACTACTCTGATATCCTGACGGTGGGCTGTGCTGTGGGAGTCGGCTGTTGTTTTGGG ACACCACTTGGAGGAGTGCTATTTAGCATCGAGGTCACCTCCACCTACTTTGCTGTTCGGAACTACTGGA GAGGATTCTTTGCAGCCACGTTCAGCGCCTTTGTGTTTCGAGTGCTGGCAGTGTGGAACAAGGATGCTGT CACCATCACTGCTCTGTTCAGAACCAATTTCCGAATGGATTTCCCCTTTGACCTGAAGGAACTACCAGCT TTTGCTGCCATCGGGATTTGCTGTGGGCTCCTGGGAGCTGTATTTGTGTATCTGCATCGCCAAGTCATGC TCGGTGTCCGAAAGCACAAGGCCCTCAGCCAGTTTCTTGCTAAGCACCGCCTGCTGTATCCTGGAATTGT TACCTTTGTCATTGCCTCATTCACCTTCCCACCAGGAATGGGTCAATTCATGGCTGGAGAGTTGATGCCC CGCGAAGCCATCAGTACTTTGTTTGACAACAATACATGGGTGAAACACGCGGGTGATCCTGAGAGCCTGG GCCAGTCAGCTGTGTGGATTCACCCCCGGGTCAACGTTGTCATCATCATCTTTCTCTTCTTCGTCATGAA GTTCTGGATGTCCATCGTGGCCACCACTATGCCCATACCCTGCGGAGGCTTCATGCCTGTGTTTGTGCTA GGAGCTGCATTTGGAAGGCTGGTAGGAGAAATCATGGCCATGCTCTTTCCTGATGGTATTTTGTTTGATG ACATCATCTACAAGATCCTACCTGGGGGCTATGCAGTAATTGGAGCAGCAGCGCTGACTGGTGCCGTTTC CCACACAGTCTCCACAGCTGTGATTTGCTTCGAATTAACGGGTCAGATTGCTCACATCCTGCCCATGATG GTGGCTGTTATCTTGGCCAACATGGTGGCCCAGAGCCTGCAGCCCTCTCTCTATGACAGCATCATCCAGG TCAAGAAGCTACCCTACTTGCCTGACCTTGGCTGGAACCAGCTCAGCAAATATACCATCTTTGTTGAGGA CATCATGGTACGTGATGTGAAGTTTGTTTCAGCTTCTTACACATATGGGGAGTTGCGAACCCTGCTCCAG ACCACCACAGTCAAGACTTTACCACTGGTTGACTCAAAAGATTCAATGATCCTGCTGGGCTCGGTGGAGC GGTCGGAACTGCAGGCCCTCCTGCAGCGCCACCTGTGTCCTGAGCGCAGGCTGCGCGCAGCCCAAGAGAT GGCGCGGAAGTTGTCGGAGCTGCCTTACGACGGGAAGGCGCGGCTGGCTGGGGAGGGGCTCCCCGGCGCG CCTCCAGGCCGGCCCGAGTCCTTCGCCTTTGTGGATGAGGATGAGGACGAAGACCTCTCTGGCAAGAGCG AGCTTCCTCCTTCCCTTGCTCTCCACCCCTCTACTACTGCCCCTCTGTCCCCAGAAGAGCCCAATGGGCC TCTGCCTGGCCACAAACAGCAGCCGGAAGCACCAGAGCCTGCAGGTCAAAGACCCTCCATCTTCCAGTCC CTGCTTCACTGCTTGCTGGGCAGAGCTCGCCCCACAAAGAAGAAAACAACCCAGGATTCCACAGATTTAG TGGATAACATGTCACCTGAAGAGATTGAGGCCTGGGAGCAGGAGCAGCTGAGCCAGCCTGTCTGTTTTGA TTCCTGCTGTATTGACCAGTCTCCCTTCCAGCTGGTGGAGCAGACAACCCTGCACAAGACTCATACCCTG TTTTCACTCCTTGGCCTCCACCTCGCTTACGTGACCAGCATGGGGAAGCTCAGGGGCGTCCTGGCCCTGG AGGAGCTACAGAAGGCCATTGAGGGGCACACCAAGTCTGGGGTGCAGCTCCGCCCTCCCCTTGCCAGCTT CCGGAACACGACTTCAACTCGAAAGAGTACCGGGGCACCTCCATCTTCTGCAGAGAACTGGAACCTGCCT GAGGACAGGCCTGGGGCCACTGGAACAGGGGATGTGATTGCTGCCTCCCCAGAGACCCCTGTGCCATCTC CTTCCCCAGAGCCCCCTCTCTCCCTGGCCCCAGGCAAGGTAGAGGGCGAGTTGGAGGAGCTGGAGCTGGT GGAGAGTCCAGGGCTGGAAGAGGAGCTGGCCGACATCTTGCAGGGCCCCAGCCTGCGATCCACAGACGAG GAGGATGAGGATGAACTGATCCTTTGA
Translation (988 aa): MEQSRSQQRGGEQSWWGSDPQYQYMPFEHCTSYGLPSENGGLQHRLRKDAGPRHNVHPTQIYGHHKEQFS DREQDIGMPKKTGSSSTVDSKDEDHYSKCQDCIHRLGQVVRRKLGEDGIFLVLLGLLMALVSWSMDYVSA KSLQAYKWSYAQMQPSLPLQFLVWVTFPLVLILFSALFCHLISPQAVGSGIPEMKTILRGVVLKEYLTMK AFVAKVVALTAGLGSGIPVGKEGPFVHIASICAAVLSKFMSVFCGVYEQPYYYSDILTVGCAVGVGCCFG TPLGGVLFSIEVTSTYFAVRNYWRGFFAATFSAFVFRVLAVWNKDAVTITALFRTNFRMDFPFDLKELPA FAAIGICCGLLGAVFVYLHRQVMLGVRKHKALSQFLAKHRLLYPGIVTFVIASFTFPPGMGQFMAGELMP REAISTLFDNNTWVKHAGDPESLGQSAVWIHPRVNVVIIIFLFFVMKFWMSIVATTMPIPCGGFMPVFVL GAAFGRLVGEIMAMLFPDGILFDDIIYKILPGGYAVIGAAALTGAVSHTVSTAVICFELTGQIAHILPMM VAVILANMVAQSLQPSLYDSIIQVKKLPYLPDLGWNQLSKYTIFVEDIMVRDVKFVSASYTYGELRTLLQ TTTVKTLPLVDSKDSMILLGSVERSELQALLQRHLCPERRLRAAQEMARKLSELPYDGKARLAGEGLPGA PPGRPESFAFVDEDEDEDLSGKSELPPSLALHPSTTAPLSPEEPNGPLPGHKQQPEAPEPAGQRPSIFQS LLHCLLGRARPTKKKTTQDSTDLVDNMSPEEIEAWEQEQLSQPVCFDSCCIDQSPFQLVEQTTLHKTHTL FSLLGLHLAYVTSMGKLRGVLALEELQKAIEGHTKSGVQLRPPLASFRNTTSTRKSTGAPPSSAENWNLP EDRPGATGTGDVIAASPETPVPSPSPEPPLSLAPGKVEGELEELELVESPGLEEELADILQGPSLRSTDE EDEDELIL
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