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Report for CCDS20367.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20367.1 Public Mus musculus 6 Chchd4 23 108 98 CCDS HistoryNCBI Gene:72170Re-query CCDS DB by CCDS ID:20367.1Re-query CCDS DB by GeneID:72170See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20367.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040835.8 ENSMUSP00000041380.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040835.8Link to Ensembl Protein Viewer:ENSMUSP00000041380.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000040835Re-query CCDS DB by Protein ID:ENSMUSP00000041380
Original member Current member NCBI NM_133928.2 NP_598689.1 Accepted alive Link to Nucleotide Sequence:NM_133928.2Link to Protein Sequence:NP_598689.1Re-query CCDS DB by Nucleotide ID:NM_133928Re-query CCDS DB by Protein ID:NP_598689Link to BLAST:NP_598689.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598689.1 139 Q8VEA4 139 100% 0 0

Chromosomal Locations for CCDS 20367.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 91465015 91465313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91467683 91467781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91473316 91473337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (420 nt):
ATGTCCTACTGCCGGCAGGAAGGGAAGGATCGGATCATATTTGTGACCAAAGAAGACCATGAAACTCCTA
GCAGTGCCGAGCTGGTAGCTGATGACCCCAATGATCCCTATGAGGAGCACGGGTTGATACTGCCTAACGG
AGATATTAACTGGAATTGTCCATGTCTTGGGGGAATGGCCAGCGGCCCCTGTGGGGAGCAGTTCAAGTCT
GCCTTCTCCTGCTTCCACTACAGCACAGAGGATATCAAGGGGTCAGACTGTATAGACCAGTTCCGGGCCA
TGCAAGAGTGCATGCAGAAGTACCCGGACCTCTATCCCCAAGACGAGGAGGAGGAAGAGGAGGCAAAGCC
AGTGGAGCCGGTGGAGGAGACAGCTGACACTAAGGTCTCTGCAGCCAAAGAGCAAGGGACAAGCTCTTGA

Translation (139 aa):
MSYCRQEGKDRIIFVTKEDHETPSSAELVADDPNDPYEEHGLILPNGDINWNCPCLGGMASGPCGEQFKS
AFSCFHYSTEDIKGSDCIDQFRAMQECMQKYPDLYPQDEEEEEEAKPVEPVEETADTKVSAAKEQGTSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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