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Report for CCDS20959.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20959.1 Public Mus musculus 7 Tex101 23 108 98 CCDS HistoryNCBI Gene:56746Re-query CCDS DB by CCDS ID:20959.1Re-query CCDS DB by GeneID:56746See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20959.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078001.6 ENSMUSP00000077150.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078001.6Link to Ensembl Protein Viewer:ENSMUSP00000077150.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000078001Re-query CCDS DB by Protein ID:ENSMUSP00000077150
Original member Current member NCBI NM_019981.2 NP_064365.1 Accepted alive Link to Nucleotide Sequence:NM_019981.2Link to Protein Sequence:NP_064365.1Re-query CCDS DB by Nucleotide ID:NM_019981Re-query CCDS DB by Protein ID:NP_064365Link to BLAST:NP_064365.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064365.1 250 Q9JMI7 250 100% 0 0

Chromosomal Locations for CCDS 20959.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 24668173 24668402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24668509 24668640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24669714 24669899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24670333 24670473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24670579 24670642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (753 nt):
ATGGGAGCCTGCCGCATCCAGTATGTCCTGCTCATCTTTCTTCTAATCGCCTCACGTTGGACTCTGGTCC
AAAATACCTACTGCCAGGTGAGTCAAACCCTGAGTCTGGAAGACGATCCAGGCCGTACCTTTAACTGGAC
TTCAAAGGCTGAGCAGTGCAATCCAGGAGAACTTTGCCAAGAAACGGTCCTGTTGATTAAAGCAGATGGA
ACCAGGACCGTCGTTTTGGCCAGTAAGAGCTGTGTTTCTCAAGGAGGAGAGGCGGTGACTTTCATCCAGT
ATACTGCACCTCCTGGCCTGGTTGCCATCTCTTACAGTAACTACTGCAATGACTCCCTCTGCAACAACAA
AGACAGCCTAGCGTCAGTCTGGCGAGTGCCAGAGACCACAGCAACCTCCAACATGTCAGGAACCCGCCAC
TGCCCGACATGTGTGGCCCTGGGCTCCTGTTCCAGTGCCCCCTCTATGCCCTGTGCCAATGGCACAACTC
AGTGCTATCAAGGAAGACTTGAATTCTCTGGAGGAGGCATGGACGCCACCGTGCAAGTTAAAGGCTGCAC
CACTACGATCGGCTGCAGACTGATGGCCATGATAGACTCAGTGGGACCCATGACAGTGAAGGAGACCTGT
AGTTACCAGTCATTCCTTCAGCCCCGGAAGGCAGAAATCGGGGCCTCTCAGATGCCCACTTCACTGTGGG
TGCTGGAGCTACTGTTTCCGTTACTGCTGCTCCCCCTCACCCACTTCCCTTGA

Translation (250 aa):
MGACRIQYVLLIFLLIASRWTLVQNTYCQVSQTLSLEDDPGRTFNWTSKAEQCNPGELCQETVLLIKADG
TRTVVLASKSCVSQGGEAVTFIQYTAPPGLVAISYSNYCNDSLCNNKDSLASVWRVPETTATSNMSGTRH
CPTCVALGSCSSAPSMPCANGTTQCYQGRLEFSGGGMDATVQVKGCTTTIGCRLMAMIDSVGPMTVKETC
SYQSFLQPRKAEIGASQMPTSLWVLELLFPLLLLPLTHFP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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