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Report for CCDS24760.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24760.1 Public Mus musculus 11 Gjc2 23 108 98 CCDS HistoryNCBI Gene:118454Re-query CCDS DB by CCDS ID:24760.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24760.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108790.1 ENSMUSP00000104418.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108790.1Link to Ensembl Protein Viewer:ENSMUSP00000104418.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108790Re-query CCDS DB by Protein ID:ENSMUSP00000104418
Original member Current member EBI ENSMUST00000108793.8 ENSMUSP00000104421.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108793.8Link to Ensembl Protein Viewer:ENSMUSP00000104421.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108793Re-query CCDS DB by Protein ID:ENSMUSP00000104421
Original member Current member NCBI NM_080454.4 NP_536702.3 Accepted alive Link to Nucleotide Sequence:NM_080454.4Link to Protein Sequence:NP_536702.3Re-query CCDS DB by Nucleotide ID:NM_080454Re-query CCDS DB by Protein ID:NP_536702Link to BLAST:NP_536702.3
Original member Current member NCBI NM_175452.4 NP_780661.2 Accepted alive Link to Nucleotide Sequence:NM_175452.4Link to Protein Sequence:NP_780661.2Re-query CCDS DB by Nucleotide ID:NM_175452Re-query CCDS DB by Protein ID:NP_780661Link to BLAST:NP_780661.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_536702.3 440 Q8BQU6 440 100% 0 0
NP_780661.2 440 Q8BQU6 440 100% 0 0

Chromosomal Locations for CCDS 24760.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 59176332 59177654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1323 nt):
ATGACCAACATGAGCTGGAGCTTCCTGACGCGGCTGCTGGAGGAGATCCACAATCATTCCACCTTCGTGG
GCAAAGTTTGGCTCACTGTGCTGGTGGTCTTCCGCATTGTGCTGACAGCCGTCGGTGGTGAGTCCATCTA
TTCAGATGAGCAATCCAAGTTCACCTGCAACACGCGGCAACCGGGTTGTGACAACGTCTGCTATGACGCC
TTTGCGCCCCTGTCTCATGTGCGCTTCTGGGTCTTCCAGATAGTGGTCATCTCCACACCTTCTGTCATGT
ACCTGGGCTATGCAGTCCACCGCTTGGCGCGGGCCTCGGAACAGGAGCGCAGACGCGCTCTCCGACGTCG
CCCTGGCACCCGGCGCTTGCCCAGGGCGCAGCTGCCACCGCCGCCACCTGGCTGGCCGGACACCACCGAT
CTGGGAGAGGCGGAGCCCATATTGGCTCTAGAGGAGGATGAGGACGAGGAGCCGGGGGCGCCCGAGGGCC
CCGGAGAAGACACGGAGGAGGAGCGAGCGGAGGATGTGGCTGCCAAAGGGGGCGGAGGTGATGGCAAGAC
GGTGGTCACTCCTGGCCCGGCCGGGCAGCACGATGGGCGGCGGCGCATCCAGAGGGAGGGCCTGATGCGT
GTGTACGTGGCTCAGCTGGTGGTTAGGGCGGCCTTCGAGGTGGCCTTTCTGGTGGGCCAGTACCTACTGT
ACGGCTTCGAGGTGCCACCCTTCTTTGCCTGCAGCCGCCAGCCTTGCCCCCACGTAGTGGATTGCTTCGT
GTCGCGGCCGACCGAGAAGACGGTCTTCTTGCTGGTCATGTACGTGGTTAGCTGTCTATGCTTGTTGCTC
AACCTCTGTGAGATGGCGCACCTGGGTCTCGGCAGTGCGCAGGATGCTGTGCGCGGCCGTCGGGGAGCCT
CAGCGGCGGGGCCTGGCCCCACGCCGCGCCCACCGCCCTGCGCTTTCCCGGCCGCGGCCGCCGGCCTGGC
TTGCCCTCCAGACTACAGCCTGGTGGTGCGTGCAGCTGAGCGCGCGCGAGCGCACGACCAGAACTTGGCG
AACCTAGCGCTGCAGGCGTTGCGCGATGGGGCGGCGGTGGCGGCGGTTTCCGCGGACCGCGACAGTCCGC
CGTGCGCTGGGCTCAATGCAACCTCTCGGGGGGCACCCAGGGTGGGCGGCCTAGCTTCCGGAACCGGCAG
CGCCACGTCGGGGGGCACCGTTGGGGAGCAGAGCCGGCCGGGAGCTCAGGAACAACTGGCCACTAAGCCC
AGGGCTGGCTCTGAAAAGGGCAGTACAGGCAGCAGAGACGGCAAGGCCACCGTGTGGATCTGA

Translation (440 aa):
MTNMSWSFLTRLLEEIHNHSTFVGKVWLTVLVVFRIVLTAVGGESIYSDEQSKFTCNTRQPGCDNVCYDA
FAPLSHVRFWVFQIVVISTPSVMYLGYAVHRLARASEQERRRALRRRPGTRRLPRAQLPPPPPGWPDTTD
LGEAEPILALEEDEDEEPGAPEGPGEDTEEERAEDVAAKGGGGDGKTVVTPGPAGQHDGRRRIQREGLMR
VYVAQLVVRAAFEVAFLVGQYLLYGFEVPPFFACSRQPCPHVVDCFVSRPTEKTVFLLVMYVVSCLCLLL
NLCEMAHLGLGSAQDAVRGRRGASAAGPGPTPRPPPCAFPAAAAGLACPPDYSLVVRAAERARAHDQNLA
NLALQALRDGAAVAAVSADRDSPPCAGLNATSRGAPRVGGLASGTGSATSGGTVGEQSRPGAQEQLATKP
RAGSEKGSTGSRDGKATVWI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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