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Report for CCDS36443.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36443.1 Public Mus musculus 12 Arhgap5 23 108 98 CCDS HistoryNCBI Gene:11855Re-query CCDS DB by CCDS ID:36443.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36443.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110725.1 ENSMUSP00000106353.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110725.1Link to Ensembl Protein Viewer:ENSMUSP00000106353.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110725Re-query CCDS DB by Protein ID:ENSMUSP00000106353
Original member Current member EBI ENSMUST00000219443.1 ENSMUSP00000151809.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000219443.1Link to Ensembl Protein Viewer:ENSMUSP00000151809.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000219443Re-query CCDS DB by Protein ID:ENSMUSP00000151809
Original member NCBI NM_009706.2 NP_033836.2 Updated not alive Link to Nucleotide Sequence:NM_009706.2Link to Protein Sequence:NP_033836.2Re-query CCDS DB by Nucleotide ID:NM_009706Re-query CCDS DB by Protein ID:NP_033836
Current member NCBI NM_009706.3 NP_033836.2 Accepted alive Link to Nucleotide Sequence:NM_009706.3Link to Protein Sequence:NP_033836.2Re-query CCDS DB by Nucleotide ID:NM_009706Re-query CCDS DB by Protein ID:NP_033836Link to BLAST:NP_033836.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033836.2 1503 P97393 1503 100% 0 0

Chromosomal Locations for CCDS 36443.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 52516248 52519967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52542489 52542636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52557489 52557566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52559968 52560099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52562322 52562427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52567011 52567338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4512 nt):
ATGATGGCAAAAAACAAAGAGCCTCGACCCCCATCTTATACTGTCAGTGTAGTTGGACTCTCTGGGACTG
AAAAAGACAAAGGAAACTGTGGAGTTGGAAAATCTTGTTTGTGCAATAGATTTGTACGTTCAAAAGCAGA
TGAATATTATCCAGAGCATACTTCTGTGCTTAGCACCATTGACTTTGGAGGCCGAGTAGTAAACAATGAT
CACTTTTTATACTGGGGTGACATAACACAAAATGGTGAAGATGGTGTAGAATGCAAAATTCATGTCATTG
AACAAACAGAGTTCATTGATGACCAGACTTTCTTGCCTCATCGAAGTACAAATTTGCAACCATATATAAA
ACGTGCAGCTGCCTCAAAATTGCAGTCAGCAGAAAAACTAATGTACATTTGTACCGATCAGCTAGGCTTG
GAGCAAGACTTTGAACAGAAGCAAATGCCTGAAGGGAAACTCAATGTAGATGGATTTTTATTGTGTATTG
ATGTGAGTCAAGGATGTAATAGGAAGTTTGATGATCAACTTAAATTTGTGAATAACCTTTTTGTCCAGCT
ATCAAAATCCAAAAAGCCTGTGATAATAGCAGCAACTAAATGTGATGAATGTGTGGATCATTACCTTAGA
GAAGTTCAAGCCTTTGCCTCAAACAAAAAGAATCTTCTAGTAGTGGAAACATCAGCACGATTTAATGTCA
ACATTGAGACATGTTTCACTGCTTTGGTACAAATGTTGGATAAAACTCGTGGCAAACCTAAAATTATTCC
CTATCTGGATGCTTATAAAACACAGAGACAACTTGTTGTCACAGCAACAGACAAGTTTGAAAAACTTGTA
CAGACTGTGAGAGATTATCATGCAACTTGGAAAACTGTTAGTAATAAATTAAAAAATCATCCTGATTATG
AAGAATATATCAACTTAGAGGGAACAAGAAAGGCCAGAAATACATTCTCAAAGCATATAGAGCAACTCAA
ACAGGAACATATAAGAAAAAGGAGAGAAGAATATATAAGTACCTTACCAAGGGCTTTTAATACTCTCTTG
CCAGATCTAGAAGAGATTGAACATTTGAATTGGTTGGAAGCTTTGAAGTTAATGGAAAAGAGAGCAGATT
TCCAGTTATGTTTTGTGGTGCTAGAAAAAACACCTTGGGATGAAACTGACCATATAGACAAAATTAATGA
TAGACGGATCCCATTCGACCTTCTGAGCACTTTAGAAGCAGAAAAAGTCTATCAAAACCATGTACAACAT
CTGATATCAGAGAAAAGAAGAATAGAAATGAAGGAGAAATTCAAGAAGACTTTAGAAAAAATTCAGTTCA
TTTCACCTGGGCAGCCATGGGAGGAAGTTATGTGTTTTGTCATGGAGGATGAAGCATTCAAATACATCAC
TGAGGCTGATAGCAAAGAAGTATATGGTAGGCATCAGCGAGAGATAGTAGAAAAAGCCAAAGAAGAGTTT
CAGGAAATGCTTTTTGAGCATTCTGAACTTTTTTATGATTTAGATCTTAATGCAACACCAAGTTCTGATA
AAATGAGTGAAATTCATACCGTTCTAAGTGAAGAACCTAGATATAAAGCTTTACAGAAACTTGCACCTGA
TAGAGAATCTCTTCTACTTAAGCATATAGGATTTGTTTATCATCCCACTAAAGAAACATGCCTCAGTGGC
CAATATTGTACAGACATTAAAGTGGAAAATTTACTTGCCACTAGTCTATTAGAGATGGATCATAACCGCG
TACGCTTGTATCATGATAGTACCAATATAGACAAAGTTAATCTTTTCATTTTAGGGAAAGATGGCCTTGC
CCAGGAACTAGCAAATGAGATAAGGACTCAATCCACTGATGATGAGTATGCCTTAGATGGAAAAATTTAT
GAACTTGATCTTCGGCCTGTTGATGCCAAATCGCCTTACATTTTGAGTCAGCTATGGACTGCAGCCTTTA
AACCACATGGGTGCTTCTGTGTATTCAATTCCATCGAGTCACTGAGTTTTATTGGAGAATTTATTGGAAA
AATAAGAACCGAAGCATCTCAGATCAGAAAAGATAAATATATGACTAATCTTCCATTTACATTAATTCTT
GCTAATCAGAGGGATTCCATTAGTAAAAATCTACCAATTCTCAGGCACCAGGGTCAGCAGTTGGCCAACA
AATTGCAGTGTCCTTTTGTAGACGTACCTACTGGTACATATCCTCGTAAATTTAATGAATCACAAATAAA
GCAAGCTCTAAGAGGAGTATTGGAATCAGTTAAACACAATTTAGATGTGGTGAGCCCAGTTCCTATCAAT
AAGGATGTGTCAGAAGCTGACTTGAGAATTGTCATGTGTGCCATGTGTGGCGATCCATTTAGTGTGGATC
TCATTCTTTCACCTTTCCTTGACTCTCATTCTTGCAGTGCTGCTCAAGCTGGACAGAATAATTCTTTAAT
GCTTGACAAAATTATTGGTGAAAAAAGGAGGCGAATACAGATCACAATATTGTCATACCACTCCTCAATT
GGAGTAAGAAAAGATGAACTGGTTCATGGGTATATATTAGTTTATTCTGCAAAAAGGAAAGCATCAATGG
GAATGCTTCGTGCATTTCTATCAGAAGTTCAAGATACTATTCCTGTACAACTGGTGGCAGTTACTGACAG
TCAAGCTGATTTCTTTGAAAATGAGGCTATCAAGGAGTTAATGACTGAAGGAGAACACATTGCAACTGAG
ATAACCGCTAAATTTACAGCATTATATTCTTTATCTCAGTATCATAGGCAAACTGAGGTTTTCACTTTGT
TTTTCAGTGATGTTCTAGAGAAAAAAAATATGATAGAAAATTCCTATTTGTCTGATAATACAAGGGAATC
CACTCATCAGAGTGAAGATGTTTTTCTACCGTCTCCAAGAGACTGTTTTCCCTATAACAACTACCCTGAT
TCAGATGATGACACAGAAGCACCACCTCCATATAGTCCAATTGGAGATGATGTACAGTTGCTTCCAACAC
CTAGTGACCGTTCCAGATACAGGTTAGATTTGGAAGGAAATGAGTATCCTGTTCATAGCACTCCAAATTG
TCACGATCATGAACGTAACCATAAAGTGCCTCCACCTATTAAACCTAAACCAGTTGTACCTAAAACAAAT
GTGAAAAAACTGGATCCAAACCTTTTAAAAACAATTGAAGCTGGTATTGGTAAAAATCCAAGAAAACAGA
CTTCCCGGGTGCCTTTGGCACATCCTGAAGATATGGATTCTTCAGATAACTATGTGGAACCCCTTGACAC
AATTTTCAAGCAGAAGGGCTATTCTGATGAGATTTATGTTGTCCCAGATGATAGTCAGAATCGAATTATT
AAAATTCGAAACTCATTTGTAAATAACACTCAAGGAGATGAAGAAAATGGGTTTTCTGATAGAACCTCAA
AAGGTCATGGAGAGCGTAGGCCTTCAAAATATAAATATAAATCTAAAACTTTGTTTAGTAAAGCCAAGTC
ATACTACAGAAGAACACACTCAGATGCAAGCGATGATGAGGCTTTCACTACTTCCAAAACAAAAAGAAAA
GGAAGACATCGTGGAAGTGAAGAAGATCCACTACTGTCTCCTGTTGAAACTTGGAAAGGTGGTATTGATA
ATCCTGCAATCACATCTGACCAGGAGGTAGATGATAAGAAGATAAAGAAGAAAACCCACAAAGTAAAGGA
AGATAAAAAGCAGAAAAAGAAAACTAAGACCTTCAACCCACCAACACGTAGAAATTGGGAAAGTAATTAC
TTTGGGATGCCCCTCCAGGATCTGGTTACAGCTGAGAAGCCTATACCACTATTTGTTGAAAAATGTGTGG
AATTTATTGAAGACACAGGATTATGTACTGAAGGACTATACCGTGTTAGTGGAAATAAAACTGATCAAGA
CAACATTCAAAAGCAGTTTGATCAAGATCATAATATCAATCTAGCATCAATGGAAGTGACAGTCAATGCT
GTAGCTGGAGCTCTCAAAGCTTTCTTTGCTGACCTGCCGGATCCTTTGATTCCATATTCACTCCACCCAG
AGCTATTGGAAGCAGCAAAAATCCCAGATAAAACAGAGCGCTTTCATGCCTTGAAAGAAATTGTTAAGAA
ATTTCATCCTGTAAACTATGATGTATTCAGATATGTGATAACACATCTAAACAGGGTTAGTCAGCAAAAT
AAAATCAACCTAATGACAGCAGACAACTTATCCATCTGTTTTTGGCCAACTTTGATGAGACCTGATTTTG
AAAATCGAGAGTTTCTGTCTACCACTAAAATCCATCAATCTGTCGTTGAAACATTTATTCAACAGTGCCA
GTTTTTCTTTTACAATGGAGAAATTGTAGAAACTGCGAACACTGTGGCTCCTCCACCTACTTCAAATCCA
GGACAATTGGTAGAATCAATGGTACCACTTCAGTTGCCACCACCATTGCAACCTCAGCTAATTCAACCAC
AATTGCAGACAGATCCTCTTGGTATTATATAA

Translation (1503 aa):
MMAKNKEPRPPSYTVSVVGLSGTEKDKGNCGVGKSCLCNRFVRSKADEYYPEHTSVLSTIDFGGRVVNND
HFLYWGDITQNGEDGVECKIHVIEQTEFIDDQTFLPHRSTNLQPYIKRAAASKLQSAEKLMYICTDQLGL
EQDFEQKQMPEGKLNVDGFLLCIDVSQGCNRKFDDQLKFVNNLFVQLSKSKKPVIIAATKCDECVDHYLR
EVQAFASNKKNLLVVETSARFNVNIETCFTALVQMLDKTRGKPKIIPYLDAYKTQRQLVVTATDKFEKLV
QTVRDYHATWKTVSNKLKNHPDYEEYINLEGTRKARNTFSKHIEQLKQEHIRKRREEYISTLPRAFNTLL
PDLEEIEHLNWLEALKLMEKRADFQLCFVVLEKTPWDETDHIDKINDRRIPFDLLSTLEAEKVYQNHVQH
LISEKRRIEMKEKFKKTLEKIQFISPGQPWEEVMCFVMEDEAFKYITEADSKEVYGRHQREIVEKAKEEF
QEMLFEHSELFYDLDLNATPSSDKMSEIHTVLSEEPRYKALQKLAPDRESLLLKHIGFVYHPTKETCLSG
QYCTDIKVENLLATSLLEMDHNRVRLYHDSTNIDKVNLFILGKDGLAQELANEIRTQSTDDEYALDGKIY
ELDLRPVDAKSPYILSQLWTAAFKPHGCFCVFNSIESLSFIGEFIGKIRTEASQIRKDKYMTNLPFTLIL
ANQRDSISKNLPILRHQGQQLANKLQCPFVDVPTGTYPRKFNESQIKQALRGVLESVKHNLDVVSPVPIN
KDVSEADLRIVMCAMCGDPFSVDLILSPFLDSHSCSAAQAGQNNSLMLDKIIGEKRRRIQITILSYHSSI
GVRKDELVHGYILVYSAKRKASMGMLRAFLSEVQDTIPVQLVAVTDSQADFFENEAIKELMTEGEHIATE
ITAKFTALYSLSQYHRQTEVFTLFFSDVLEKKNMIENSYLSDNTRESTHQSEDVFLPSPRDCFPYNNYPD
SDDDTEAPPPYSPIGDDVQLLPTPSDRSRYRLDLEGNEYPVHSTPNCHDHERNHKVPPPIKPKPVVPKTN
VKKLDPNLLKTIEAGIGKNPRKQTSRVPLAHPEDMDSSDNYVEPLDTIFKQKGYSDEIYVVPDDSQNRII
KIRNSFVNNTQGDEENGFSDRTSKGHGERRPSKYKYKSKTLFSKAKSYYRRTHSDASDDEAFTTSKTKRK
GRHRGSEEDPLLSPVETWKGGIDNPAITSDQEVDDKKIKKKTHKVKEDKKQKKKTKTFNPPTRRNWESNY
FGMPLQDLVTAEKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLASMEVTVNA
VAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERFHALKEIVKKFHPVNYDVFRYVITHLNRVSQQN
KINLMTADNLSICFWPTLMRPDFENREFLSTTKIHQSVVETFIQQCQFFFYNGEIVETANTVAPPPTSNP
GQLVESMVPLQLPPPLQPQLIQPQLQTDPLGII


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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