NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS58239.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58239.1 Public Homo sapiens 12 SMUG1 24 110 108 CCDS HistoryNCBI Gene:23583Re-query CCDS DB by CCDS ID:58239.1Re-query CCDS DB by GeneID:23583See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58239.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000243112.9 ENSP00000243112.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000243112.9Link to Ensembl Protein Viewer:ENSP00000243112.5Re-query CCDS DB by Nucleotide ID:ENST00000243112Re-query CCDS DB by Protein ID:ENSP00000243112
Original member Current member EBI ENST00000514685.5 ENSP00000421139.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000514685.5Link to Ensembl Protein Viewer:ENSP00000421139.1Re-query CCDS DB by Nucleotide ID:ENST00000514685Re-query CCDS DB by Protein ID:ENSP00000421139
Original member Current member EBI ENST00000506595.5 ENSP00000421206.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000506595.5Link to Ensembl Protein Viewer:ENSP00000421206.1Re-query CCDS DB by Nucleotide ID:ENST00000506595Re-query CCDS DB by Protein ID:ENSP00000421206
Original member Current member EBI ENST00000513838.5 ENSP00000423629.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000513838.5Link to Ensembl Protein Viewer:ENSP00000423629.1Re-query CCDS DB by Nucleotide ID:ENST00000513838Re-query CCDS DB by Protein ID:ENSP00000423629
Original member Current member NCBI NM_001243789.2 NP_001230718.1 Accepted alive Link to Nucleotide Sequence:NM_001243789.2Link to Protein Sequence:NP_001230718.1Re-query CCDS DB by Nucleotide ID:NM_001243789Re-query CCDS DB by Protein ID:NP_001230718Link to BLAST:NP_001230718.1
Original member Current member NCBI NM_001243790.2 NP_001230719.1 Accepted alive Link to Nucleotide Sequence:NM_001243790.2Link to Protein Sequence:NP_001230719.1Re-query CCDS DB by Nucleotide ID:NM_001243790Re-query CCDS DB by Protein ID:NP_001230719Link to BLAST:NP_001230719.1
Original member Current member NCBI NM_001243791.2 NP_001230720.1 Accepted alive Link to Nucleotide Sequence:NM_001243791.2Link to Protein Sequence:NP_001230720.1Re-query CCDS DB by Nucleotide ID:NM_001243791Re-query CCDS DB by Protein ID:NP_001230720Link to BLAST:NP_001230720.1
Original member Current member NCBI NM_001351237.2 NP_001338166.1 Accepted alive Link to Nucleotide Sequence:NM_001351237.2Link to Protein Sequence:NP_001338166.1Re-query CCDS DB by Nucleotide ID:NM_001351237Re-query CCDS DB by Protein ID:NP_001338166Link to BLAST:NP_001338166.1
Original member Current member NCBI NM_001351238.2 NP_001338167.1 Accepted alive Link to Nucleotide Sequence:NM_001351238.2Link to Protein Sequence:NP_001338167.1Re-query CCDS DB by Nucleotide ID:NM_001351238Re-query CCDS DB by Protein ID:NP_001338167Link to BLAST:NP_001338167.1
Original member Current member NCBI NM_001351239.2 NP_001338168.1 Accepted alive Link to Nucleotide Sequence:NM_001351239.2Link to Protein Sequence:NP_001338168.1Re-query CCDS DB by Nucleotide ID:NM_001351239Re-query CCDS DB by Protein ID:NP_001338168Link to BLAST:NP_001338168.1
Original member Current member NCBI NM_001351240.2 NP_001338169.1 Accepted alive Link to Nucleotide Sequence:NM_001351240.2Link to Protein Sequence:NP_001338169.1Re-query CCDS DB by Nucleotide ID:NM_001351240Re-query CCDS DB by Protein ID:NP_001338169Link to BLAST:NP_001338169.1
Original member Current member NCBI NM_001351241.2 NP_001338170.1 Accepted alive Link to Nucleotide Sequence:NM_001351241.2Link to Protein Sequence:NP_001338170.1Re-query CCDS DB by Nucleotide ID:NM_001351241Re-query CCDS DB by Protein ID:NP_001338170Link to BLAST:NP_001338170.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001230718.1 177 Q53HV7-2 177 100% 0 0
NP_001230719.1 177 Q53HV7-2 177 100% 0 0
NP_001230720.1 177 Q53HV7-2 177 100% 0 0
NP_001338166.1 177 Q53HV7-2 177 100% 0 0
NP_001338167.1 177 Q53HV7-2 177 100% 0 0
NP_001338168.1 177 Q53HV7-2 177 100% 0 0
NP_001338169.1 177 Q53HV7-2 177 100% 0 0
NP_001338170.1 177 Q53HV7-2 177 100% 0 0

Chromosomal Locations for CCDS 58239.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 54181519 54181647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54182504 54182623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54183656 54183940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (534 nt):
ATGCCCCAGGCTTTCCTGCTGGGGTCCATCCATGAGCCTGCAGGTGCCCTCATGGAGCCCCAGCCCTGCC
CTGGAAGCTTGGCTGAGAGCTTCCTGGAGGAGGAGCTTCGGCTCAATGCTGAGCTGAGCCAGCTGCAGTT
TTCGGAGCCTGTGGGCATCATCTACAATCCCGTGGAGTATGCATGGGAGCCACATCGCAACTACGTGACT
CGCTACTGCCAGGGCCCCAAGGAAGTACTCTTCCTGGGCATGAACCCTGGACCTTTTGGCATGGCCCAGA
CTGGGGTGCCCTTTGGGGAAGTAAGCATGGTCCGGGACTGGTTGGGCATTGTGGGGCCTGTGCTGACCCC
TCCCCAAGAGCATCCTAAACGACCAGTGCTGGGACTGGAGTGCCCACAGTCAGAAGGACCAAGACAAAGC
ATGGGACATGAAATTAAGAGTGAACTTCTTATGGGAGGCTGCAGCTGGATCAGAGGAAAAATCCAGTGTG
ACAGAGTGCAAGTCAGAAGACCTGGCTTTTCATCCCAGCTTTGA

Translation (177 aa):
MPQAFLLGSIHEPAGALMEPQPCPGSLAESFLEEELRLNAELSQLQFSEPVGIIYNPVEYAWEPHRNYVT
RYCQGPKEVLFLGMNPGPFGMAQTGVPFGEVSMVRDWLGIVGPVLTPPQEHPKRPVLGLECPQSEGPRQS
MGHEIKSELLMGGCSWIRGKIQCDRVQVRRPGFSSQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH