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Report for CCDS58239.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
58239.1 |
Public |
Homo sapiens |
12 |
SMUG1 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:23583](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:58239.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:23583](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 12 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 58239.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000243112.9 |
ENSP00000243112.5 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000243112.9](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000243112.5](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000243112](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000243112](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000514685.5 |
ENSP00000421139.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000514685.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000421139.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000514685](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000421139](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000506595.5 |
ENSP00000421206.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000506595.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000421206.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000506595](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000421206](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000513838.5 |
ENSP00000423629.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000513838.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000423629.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000513838](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000423629](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001243789.2 |
NP_001230718.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001243789.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001230718.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001243789](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001230718](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001230718.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001243790.2 |
NP_001230719.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001243790.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001230719.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001243790](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001230719](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001230719.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001243791.2 |
NP_001230720.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001243791.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001230720.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001243791](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001230720](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001230720.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001351237.2 |
NP_001338166.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001351237.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001338166.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001351237](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001338166](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001338166.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001351238.2 |
NP_001338167.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001351238.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001338167.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001351238](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001338167](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001338167.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001351239.2 |
NP_001338168.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001351239.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001338168.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001351239](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001338168](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001338168.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001351240.2 |
NP_001338169.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001351240.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001338169.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001351240](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001338169](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001338169.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001351241.2 |
NP_001338170.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001351241.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001338170.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001351241](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001338170](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001338170.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 58239.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (534 nt): ATGCCCCAGGCTTTCCTGCTGGGGTCCATCCATGAGCCTGCAGGTGCCCTCATGGAGCCCCAGCCCTGCC CTGGAAGCTTGGCTGAGAGCTTCCTGGAGGAGGAGCTTCGGCTCAATGCTGAGCTGAGCCAGCTGCAGTT TTCGGAGCCTGTGGGCATCATCTACAATCCCGTGGAGTATGCATGGGAGCCACATCGCAACTACGTGACT CGCTACTGCCAGGGCCCCAAGGAAGTACTCTTCCTGGGCATGAACCCTGGACCTTTTGGCATGGCCCAGA CTGGGGTGCCCTTTGGGGAAGTAAGCATGGTCCGGGACTGGTTGGGCATTGTGGGGCCTGTGCTGACCCC TCCCCAAGAGCATCCTAAACGACCAGTGCTGGGACTGGAGTGCCCACAGTCAGAAGGACCAAGACAAAGC ATGGGACATGAAATTAAGAGTGAACTTCTTATGGGAGGCTGCAGCTGGATCAGAGGAAAAATCCAGTGTG ACAGAGTGCAAGTCAGAAGACCTGGCTTTTCATCCCAGCTTTGA
Translation (177 aa): MPQAFLLGSIHEPAGALMEPQPCPGSLAESFLEEELRLNAELSQLQFSEPVGIIYNPVEYAWEPHRNYVT RYCQGPKEVLFLGMNPGPFGMAQTGVPFGEVSMVRDWLGIVGPVLTPPQEHPKRPVLGLECPQSEGPRQS MGHEIKSELLMGGCSWIRGKIQCDRVQVRRPGFSSQL
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