NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS9100.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9100.2 Public Homo sapiens 12 SLC41A2 24 110 108 CCDS HistoryNCBI Gene:84102Re-query CCDS DB by CCDS ID:9100.2Re-query CCDS DB by GeneID:84102See the combined annotation on chromosome 12 in Sequence Viewer

Public Note for CCDS 9100.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 9100.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000258538.8 ENSP00000258538.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000258538.8Link to Ensembl Protein Viewer:ENSP00000258538.3Re-query CCDS DB by Nucleotide ID:ENST00000258538Re-query CCDS DB by Protein ID:ENSP00000258538
Original member Current member NCBI NM_001352169.2 NP_001339098.1 Accepted alive Link to Nucleotide Sequence:NM_001352169.2Link to Protein Sequence:NP_001339098.1Re-query CCDS DB by Nucleotide ID:NM_001352169Re-query CCDS DB by Protein ID:NP_001339098Link to BLAST:NP_001339098.1
Original member Current member NCBI NM_001352170.3 NP_001339099.1 Accepted alive Link to Nucleotide Sequence:NM_001352170.3Link to Protein Sequence:NP_001339099.1Re-query CCDS DB by Nucleotide ID:NM_001352170Re-query CCDS DB by Protein ID:NP_001339099Link to BLAST:NP_001339099.1
Original member Current member NCBI NM_001352171.3 NP_001339100.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001352171.3Link to Protein Sequence:NP_001339100.1Re-query CCDS DB by Nucleotide ID:NM_001352171Re-query CCDS DB by Protein ID:NP_001339100Link to BLAST:NP_001339100.1
Original member Current member NCBI NM_001352172.3 NP_001339101.1 Accepted alive Link to Nucleotide Sequence:NM_001352172.3Link to Protein Sequence:NP_001339101.1Re-query CCDS DB by Nucleotide ID:NM_001352172Re-query CCDS DB by Protein ID:NP_001339101Link to BLAST:NP_001339101.1
Original member Current member NCBI NM_001387125.1 NP_001374054.1 Accepted alive Link to Nucleotide Sequence:NM_001387125.1Link to Protein Sequence:NP_001374054.1Re-query CCDS DB by Nucleotide ID:NM_001387125Re-query CCDS DB by Protein ID:NP_001374054Link to BLAST:NP_001374054.1
Original member Current member NCBI NM_001387126.1 NP_001374055.1 Accepted alive Link to Nucleotide Sequence:NM_001387126.1Link to Protein Sequence:NP_001374055.1Re-query CCDS DB by Nucleotide ID:NM_001387126Re-query CCDS DB by Protein ID:NP_001374055Link to BLAST:NP_001374055.1
Original member Current member NCBI NM_001387127.1 NP_001374056.1 Accepted alive Link to Nucleotide Sequence:NM_001387127.1Link to Protein Sequence:NP_001374056.1Re-query CCDS DB by Nucleotide ID:NM_001387127Re-query CCDS DB by Protein ID:NP_001374056Link to BLAST:NP_001374056.1
Original member Current member NCBI NM_032148.6 NP_115524.3 Accepted alive Link to Nucleotide Sequence:NM_032148.6Link to Protein Sequence:NP_115524.3Re-query CCDS DB by Nucleotide ID:NM_032148Re-query CCDS DB by Protein ID:NP_115524Link to BLAST:NP_115524.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001339098.1 573 Q96JW4 573 100% 0 0
NP_001339099.1 573 Q96JW4 573 100% 0 0
NP_001339100.1 573 Q96JW4 573 100% 0 0
NP_001339101.1 573 Q96JW4 573 100% 0 0
NP_001374054.1 573 Q96JW4 573 100% 0 0
NP_001374055.1 573 Q96JW4 573 100% 0 0
NP_001374056.1 573 Q96JW4 573 100% 0 0
NP_115524.3 573 Q96JW4 573 100% 0 0

Chromosomal Locations for CCDS 9100.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 104805152 104805337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104844472 104844620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104845843 104845974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104861291 104861370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104866432 104866579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104886293 104886439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104889033 104889177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104895274 104895345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104909655 104909762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104927973 104928527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1722 nt):
ATGACTAATAGTAAAGGAAGATCTATTACCGATAAAACAAGTGGTGGTCCAAGTAGTGGAGGAGGTTTTG
TAGATTGGACTTTACGTTTAAACACAATTCAATCCGACAAGTTTTTAAATTTACTCTTGAGTATGGTTCC
AGTGATTTACCAGAAAAACCAAGAAGACAGGCACAAAAAAGCAAACGGCATTTGGCAAGATGGATTATCA
ACTGCAGTACAGACTTTTAGTAATAGATCTGAGCAACACATGGAGTATCACAGTTTCTCAGAGCAGTCTT
TTCATGCCAATAATGGGCACGCATCATCAAGCTGCAGCCAAAAGTATGATGACTATGCCAATTATAATTA
CTGTGATGGAAGGGAGACTTCAGAAACCACTGCCATGTTACAAGATGAAGATATATCTAGTGATGGTGAT
GAAGATGCTATTGTAGAAGTGACCCCAAAATTACCAAAGGAATCCAGTGGCATCATGGCATTGCAAATAC
TTGTGCCCTTTTTGCTAGCTGGTTTTGGAACAGTTTCAGCTGGCATGGTACTGGATATAGTACAGCACTG
GGAGGTGTTCAGAAAAGTTACAGAAGTTTTCATTTTAGTCCCTGCACTTCTTGGTCTCAAAGGGAACTTG
GAAATGACATTGGCATCCAGATTATCCACTGCAGTAAATATTGGGAAGATGGATTCACCCATTGAAAAGT
GGAACCTAATAATTGGCAACTTGGCTTTAAAGCAGGTTCAGGCAACAGTAGTGGGTTTTCTAGCAGCTGT
GGCAGCAATTATATTGGGCTGGATTCCAGAAGGAAAATATTACCTTGATCATTCCATACTTCTGTGCTCT
AGCAGTGTGGCAACTGCCTTCATTGCATCTCTTCTGCAGGGAATAATAATGGTTGGGGTTATCGTTGGTT
CAAAGAAGACTGGTATAAATCCTGATAATGTTGCTACACCCATTGCTGCTAGTTTTGGCGACCTTATAAC
TCTTGCCATATTGGCTTGGATAAGTCAGGGCTTATACTCCTGTCTTGAGACCTATTACTACATTTCTCCA
TTAGTTGGTGTATTTTTCTTGGCTCTAACCCCTATTTGGATTATAATAGCTGCCAAACATCCAGCCACAA
GAACAGTTCTCCACTCAGGCTGGGAGCCTGTCATAACAGCTATGGTTATAAGTAGCATTGGGGGCCTTAT
TCTGGACACAACTGTATCAGACCCAAACTTGGTTGGGATTGTTGTTTACACGCCAGTTATTAATGGTATT
GGTGGTAATTTGGTGGCCATTCAGGCTAGCAGGATTTCTACCTACCTCCATTTACATAGCATTCCAGGAG
AATTGCCTGATGAACCCAAAGGTTGTTACTACCCATTTAGAACTTTCTTTGGTCCAGGAGTAAATAATAA
GTCTGCTCAAGTTCTACTGCTTTTAGTGATTCCTGGACATTTAATTTTCCTCTACACTATTCATTTGATG
AAAAGTGGTCATACTTCTTTAACTATAATCTTCATAGTAGTGTATTTATTTGGCGCTGTGTTACAGGTAT
TTACCTTGCTGTGGATTGCTGACTGGATGGTCCATCACTTCTGGAGGAAAGGAAAGGACCCGGATAGTTT
CTCCATCCCCTACCTAACAGCATTGGGTGATCTGCTCGGGACAGCTCTGTTAGCCTTAAGTTTTCATTTT
CTTTGGCTTATTGGAGATCGAGATGGAGATGTTGGAGACTAA

Translation (573 aa):
MTNSKGRSITDKTSGGPSSGGGFVDWTLRLNTIQSDKFLNLLLSMVPVIYQKNQEDRHKKANGIWQDGLS
TAVQTFSNRSEQHMEYHSFSEQSFHANNGHASSSCSQKYDDYANYNYCDGRETSETTAMLQDEDISSDGD
EDAIVEVTPKLPKESSGIMALQILVPFLLAGFGTVSAGMVLDIVQHWEVFRKVTEVFILVPALLGLKGNL
EMTLASRLSTAVNIGKMDSPIEKWNLIIGNLALKQVQATVVGFLAAVAAIILGWIPEGKYYLDHSILLCS
SSVATAFIASLLQGIIMVGVIVGSKKTGINPDNVATPIAASFGDLITLAILAWISQGLYSCLETYYYISP
LVGVFFLALTPIWIIIAAKHPATRTVLHSGWEPVITAMVISSIGGLILDTTVSDPNLVGIVVYTPVINGI
GGNLVAIQASRISTYLHLHSIPGELPDEPKGCYYPFRTFFGPGVNNKSAQVLLLLVIPGHLIFLYTIHLM
KSGHTSLTIIFIVVYLFGAVLQVFTLLWIADWMVHHFWRKGKDPDSFSIPYLTALGDLLGTALLALSFHF
LWLIGDRDGDVGD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH