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Report for CCDS19259.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19259.1 Public Mus musculus 5 Nkx3-2 23 108 98 CCDS HistoryNCBI Gene:12020Re-query CCDS DB by CCDS ID:19259.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19259.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060820.7 ENSMUSP00000051990.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060820.7Link to Ensembl Protein Viewer:ENSMUSP00000051990.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000060820Re-query CCDS DB by Protein ID:ENSMUSP00000051990
Original member Current member NCBI NM_007524.3 NP_031550.2 Accepted alive Link to Nucleotide Sequence:NM_007524.3Link to Protein Sequence:NP_031550.2Re-query CCDS DB by Nucleotide ID:NM_007524Re-query CCDS DB by Protein ID:NP_031550Link to BLAST:NP_031550.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031550.2 333 P97503 333 100% 0 0

Chromosomal Locations for CCDS 19259.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 41761642 41762177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 41763479 41763944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1002 nt):
ATGGCTGTGCGCGGCAGCGGCACCTTGACGCCCTTCTCCATCCAGGCGATCCTCAACAAGAAAGAGGAGC
GCGGCGGGTTGGCTACGCCGGAGGGGCGCCCGGCACCAGGGGGCACAGAGGTGGCGGTGACCGCGGCGCC
CGCCGTCTGCTGCTGGCGGATCTTCGGGGAGACCGAGGCCGGTGCGCTGGGGGGCGCCGAGGACTCTCTT
CTGGCATCTCCCGCCCGAACCAGAACAGCCGTGGGGCAGAGCGCAGAGAGTCCGGGAGGTTGGGACTCAG
ACTCAGCCCTGAGCGAAGAGAACGAGGGCAGGAGGCGCTGCGCCGATGTCCCGGGAGCCAGTGGAACCGG
CCGCGCCAGGGTGACCCTGGGCCTGGACCAGCCAGGCTGCGAGCTGCACGCCGCCAAGGACCTGGAGGAG
GAAGCCCCGGTCCGCAGCGACAGCGAGATGTCAGCCAGCGTTTCAGGCGACCACAGCCCGAGAGGCGAGG
ATGACAGCGTTAGCCCTGGAGGTGCACGCGTGCCTGGGTTGCGCGGCGCCGCGGGCAGCGGGGCTAGCGG
CGGGCAGGCGGGCGGCGTGGAGGAGGAGGAAGAGCCCGCAGCCCCTAAACCGCGAAAGAAGCGCTCCCGG
GCCGCCTTCTCGCACGCCCAGGTCTTCGAGCTGGAGCGCCGCTTTAACCATCAGCGCTACCTGTCCGGGC
CGGAGCGCGCAGACCTGGCAGCTTCGCTGAAGCTCACAGAGACGCAAGTGAAGATCTGGTTTCAGAACCG
TCGCTACAAGACCAAACGCCGGCAGATGGCCGCCGACCTGCTCGCCTCTGCACCCGCCGCCAAGAAAGTG
GCCGTAAAGGTGCTGGTGCGTGACGACCAAAGACAGTATTTGCCCGGAGAGGTGCTGAGGCCACCTTCCC
TTCTGCCACTGCAGCCCTCCTACTACTACCCTTACTACTGTCTCCCGGGCTGGGCGCTGTCCACGTGCGC
GGCCGCTGCTGGTACCCAGTGA

Translation (333 aa):
MAVRGSGTLTPFSIQAILNKKEERGGLATPEGRPAPGGTEVAVTAAPAVCCWRIFGETEAGALGGAEDSL
LASPARTRTAVGQSAESPGGWDSDSALSEENEGRRRCADVPGASGTGRARVTLGLDQPGCELHAAKDLEE
EAPVRSDSEMSASVSGDHSPRGEDDSVSPGGARVPGLRGAAGSGASGGQAGGVEEEEEPAAPKPRKKRSR
AAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRRQMAADLLASAPAAKKV
AVKVLVRDDQRQYLPGEVLRPPSLLPLQPSYYYPYYCLPGWALSTCAAAAGTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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