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Report for CCDS17954.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17954.1 Public Mus musculus 4 Car8 23 108 98 CCDS HistoryNCBI Gene:12319Re-query CCDS DB by CCDS ID:17954.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17954.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066674.7 ENSMUSP00000063511.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066674.7Link to Ensembl Protein Viewer:ENSMUSP00000063511.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000066674Re-query CCDS DB by Protein ID:ENSMUSP00000063511
Original member NCBI NM_007592.3 NP_031618.2 Updated not alive Link to Nucleotide Sequence:NM_007592.3Link to Protein Sequence:NP_031618.2Re-query CCDS DB by Nucleotide ID:NM_007592Re-query CCDS DB by Protein ID:NP_031618
Current member NCBI NM_007592.4 NP_031618.2 Accepted alive Link to Nucleotide Sequence:NM_007592.4Link to Protein Sequence:NP_031618.2Re-query CCDS DB by Nucleotide ID:NM_007592Re-query CCDS DB by Protein ID:NP_031618Link to BLAST:NP_031618.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031618.2 291 P28651 291 100% 0 0

Chromosomal Locations for CCDS 17954.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 8169631 8169765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8183253 8183365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8184584 8184632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8185576 8185638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8189297 8189392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8221550 8221674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8237919 8238110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8238852 8238954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (876 nt):
ATGGCTGACCTGAGCTTCATTGAGGATGCAGTCGCCTTCCCCGAGAAGGAGGAAGACGAGGAAGAGGAGG
AGGAGGAGGGCGTGGAGTGGGGTTACGAGGAAGGTGTTGAGTGGGGCTTAGTGTTTCCTGATGCTAATGG
GGAGTACCAGTCACCTATCAACCTAAACTCCAGAGAAGCCAGGTATGACCCCTCACTGCTGGATGTCCGC
CTGTCTCCAAATTATGTGGTGTGCCGGGACTGTGAAGTCACCAACGATGGACACACCATTCAAGTCATCC
TGAAGTCAAAATCAGTCTTGTCAGGAGGACCACTGCCTCAGGGACAGGAGTTTGAGCTGTATGAAGTTAG
ATTTCACTGGGGAAGAGAAAACCAGCGTGGTTCTGAGCACACGGTCAATTTCAAAGCCTTTCCCATGGAG
CTCCACCTGATCCACTGGAATTCCACACTGTTTGGCAGCATCGATGAGGCGGTTGGGAAGCCCCATGGTA
TCGCCATCATTGCACTATTTGTTCAGATCGGGAAGGAACATGTTGGCTTGAAGGCTGTGACTGAGATCCT
CCAGGATATTCAATATAAGGGAAAATCCAAAACAATTCCATGCTTTAATCCTAACACTTTATTACCAGAC
CCTCTTCTGCGGGATTACTGGGTCTATGAAGGATCTCTTACTATCCCACCTTGCAGCGAAGGAGTTACCT
GGATATTATTCCGATACCCTTTAACTATATCCCAGATGCAGATAGAAGAATTTCGAAGGCTGAGGACACA
TGTCAAGGGGGCAGAACTGGTGGAGGGCTGCGATGGGATTTTGGGAGACAATTTCCGACCTACCCAGCCC
CTGAGTGATAGAGTCATCCGAGCGGCCTTTCAGTAG

Translation (291 aa):
MADLSFIEDAVAFPEKEEDEEEEEEEGVEWGYEEGVEWGLVFPDANGEYQSPINLNSREARYDPSLLDVR
LSPNYVVCRDCEVTNDGHTIQVILKSKSVLSGGPLPQGQEFELYEVRFHWGRENQRGSEHTVNFKAFPME
LHLIHWNSTLFGSIDEAVGKPHGIAIIALFVQIGKEHVGLKAVTEILQDIQYKGKSKTIPCFNPNTLLPD
PLLRDYWVYEGSLTIPPCSEGVTWILFRYPLTISQMQIEEFRRLRTHVKGAELVEGCDGILGDNFRPTQP
LSDRVIRAAFQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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