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Report for CCDS16426.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16426.1 Public Mus musculus 2 Nr1h3 23 108 98 CCDS HistoryNCBI Gene:22259Re-query CCDS DB by CCDS ID:16426.1Re-query CCDS DB by GeneID:22259See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16426.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002177.8 ENSMUSP00000002177.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002177.8Link to Ensembl Protein Viewer:ENSMUSP00000002177.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000002177Re-query CCDS DB by Protein ID:ENSMUSP00000002177
Original member Current member EBI ENSMUST00000111354.1 ENSMUSP00000106986.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111354.1Link to Ensembl Protein Viewer:ENSMUSP00000106986.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111354Re-query CCDS DB by Protein ID:ENSMUSP00000106986
Original member Current member EBI ENSMUST00000111356.7 ENSMUSP00000106988.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111356.7Link to Ensembl Protein Viewer:ENSMUSP00000106988.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111356Re-query CCDS DB by Protein ID:ENSMUSP00000106988
Original member Current member NCBI NM_001177730.1 NP_001171201.1 Accepted alive Link to Nucleotide Sequence:NM_001177730.1Link to Protein Sequence:NP_001171201.1Re-query CCDS DB by Nucleotide ID:NM_001177730Re-query CCDS DB by Protein ID:NP_001171201Link to BLAST:NP_001171201.1
Original member Current member NCBI NM_001355279.1 NP_001342208.1 Accepted alive Link to Nucleotide Sequence:NM_001355279.1Link to Protein Sequence:NP_001342208.1Re-query CCDS DB by Nucleotide ID:NM_001355279Re-query CCDS DB by Protein ID:NP_001342208Link to BLAST:NP_001342208.1
Original member Current member NCBI NM_013839.4 NP_038867.2 Accepted alive Link to Nucleotide Sequence:NM_013839.4Link to Protein Sequence:NP_038867.2Re-query CCDS DB by Nucleotide ID:NM_013839Re-query CCDS DB by Protein ID:NP_038867Link to BLAST:NP_038867.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171201.1 445 Q9Z0Y9 445 100% 0 0
NP_001342208.1 445 Q9Z0Y9 445 100% 0 0
NP_038867.2 445 Q9Z0Y9 445 100% 0 0

Chromosomal Locations for CCDS 16426.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 91184336 91184482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91184655 91184749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91184942 91185055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91190185 91190284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91190462 91190641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91190739 91190947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91191789 91192055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91192560 91192742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91193617 91193659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1338 nt):
ATGTCCTTGTGGCTGGAGGCCTCAATGCCTGATGTTTCTCCTGATTCTGCAACGGAGTTGTGGAAGACAG
AACCTCAAGATGCAGGAGACCAGGGAGGCAACACTTGCATCCTCAGGGAGGAAGCCAGGATGCCCCAGTC
AACTGGGGTTGCTTTAGGGATAGGGTTGGAGTCAGCAGAGCCTACAGCCCTGCTCCCCAGGGCAGAGACC
CTCCCAGAGCCGACAGAGCTTCGTCCACAAAAGCGGAAAAAGGGCCCAGCCCCCAAAATGCTGGGGAACG
AGCTGTGCAGTGTCTGTGGGGACAAAGCCTCTGGCTTCCATTACAACGTGCTGAGCTGCGAGGGCTGCAA
GGGATTCTTCCGCCGCAGTGTCATCAAGGGAGCACGCTATGTCTGCCACAGCGGTGGCCACTGCCCCATG
GACACCTACATGCGGCGGAAATGCCAGGAGTGTCGACTTCGCAAATGCCGCCAGGCAGGCATGAGGGAGG
AGTGTGTGCTGTCAGAAGAACAGATCCGCTTGAAGAAACTGAAGCGGCAAGAAGAGGAACAGGCTCAAGC
CACTTCGGTGTCCCCAAGGGTGTCCTCACCTCCTCAAGTCCTGCCACAGCTCAGCCCAGAGCAGCTGGGC
ATGATCGAGAAGCTGGTGGCTGCCCAGCAACAGTGTAACAGGCGCTCCTTCTCAGACCGCCTGCGCGTCA
CGCCTTGGCCCATTGCACCCGACCCTCAGAGCCGGGAAGCCCGACAACAGCGCTTTGCCCACTTTACTGA
GCTGGCCATCGTGTCCGTGCAGGAGATTGTTGACTTTGCCAAACAGCTCCCTGGCTTCCTACAGCTCAGC
AGGGAGGACCAGATCGCCTTGCTGAAGACCTCTGCAATCGAGGTCATGCTTCTGGAGACGTCACGGAGGT
ACAACCCCGGCAGTGAGAGCATCACCTTCCTCAAGGACTTCAGTTACAACCGGGAAGACTTTGCCAAAGC
AGGGCTGCAGGTGGAGTTCATCAACCCCATCTTTGAGTTCTCCAGAGCCATGAATGAGCTGCAACTCAAT
GATGCTGAGTTTGCTCTGCTCATTGCCATCAGCATCTTCTCTGCAGACCGGCCCAACGTGCAGGACCAGC
TCCAAGTAGAGAGGCTGCAACACACATATGTGGAGGCCCTGCACGCCTACGTCTCCATCAACCACCCCCA
CGACCCACTGATGTTCCCACGGATGCTAATGAAGCTGGTGAGCCTCCGTACTTTGAGCAGCGTCCATTCA
GAGCAAGTGTTTGCCCTTCGCCTGCAGGACAAAAAGCTTCCCCCTCTGCTGTCTGAGATCTGGGATGTCC
ACGAGTGA

Translation (445 aa):
MSLWLEASMPDVSPDSATELWKTEPQDAGDQGGNTCILREEARMPQSTGVALGIGLESAEPTALLPRAET
LPEPTELRPQKRKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGARYVCHSGGHCPM
DTYMRRKCQECRLRKCRQAGMREECVLSEEQIRLKKLKRQEEEQAQATSVSPRVSSPPQVLPQLSPEQLG
MIEKLVAAQQQCNRRSFSDRLRVTPWPIAPDPQSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLS
REDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLN
DAEFALLIAISIFSADRPNVQDQLQVERLQHTYVEALHAYVSINHPHDPLMFPRMLMKLVSLRTLSSVHS
EQVFALRLQDKKLPPLLSEIWDVHE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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