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Report for CCDS18009.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18009.1 Public Mus musculus 4 Fhl5 23 108 98 CCDS HistoryNCBI Gene:57756Re-query CCDS DB by CCDS ID:18009.1Re-query CCDS DB by GeneID:57756See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18009.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029922.13 ENSMUSP00000029922.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029922.13Link to Ensembl Protein Viewer:ENSMUSP00000029922.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029922Re-query CCDS DB by Protein ID:ENSMUSP00000029922
Original member Current member EBI ENSMUST00000108204.1 ENSMUSP00000103839.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108204.1Link to Ensembl Protein Viewer:ENSMUSP00000103839.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108204Re-query CCDS DB by Protein ID:ENSMUSP00000103839
Original member NCBI NM_001355498.1 NP_001342427.1 Updated not alive Link to Nucleotide Sequence:NM_001355498.1Link to Protein Sequence:NP_001342427.1Re-query CCDS DB by Nucleotide ID:NM_001355498Re-query CCDS DB by Protein ID:NP_001342427
Current member NCBI NM_001355498.2 NP_001342427.1 Accepted alive Link to Nucleotide Sequence:NM_001355498.2Link to Protein Sequence:NP_001342427.1Re-query CCDS DB by Nucleotide ID:NM_001355498Re-query CCDS DB by Protein ID:NP_001342427Link to BLAST:NP_001342427.1
Original member NCBI NM_021318.4 NP_067293.1 Updated not alive Link to Nucleotide Sequence:NM_021318.4Link to Protein Sequence:NP_067293.1Re-query CCDS DB by Nucleotide ID:NM_021318Re-query CCDS DB by Protein ID:NP_067293
Current member NCBI NM_021318.5 NP_067293.1 Accepted alive Link to Nucleotide Sequence:NM_021318.5Link to Protein Sequence:NP_067293.1Re-query CCDS DB by Nucleotide ID:NM_021318Re-query CCDS DB by Protein ID:NP_067293Link to BLAST:NP_067293.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342427.1 284 Q9WTX7 284 100% 0 0
NP_067293.1 284 Q9WTX7 284 100% 0 0

Chromosomal Locations for CCDS 18009.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 25199978 25200141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25207076 25207262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25211187 25211356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25213601 25213775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25214617 25214775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (855 nt):
ATGACAAGTAGTCAATTTGATTGTCAATACTGCACTTCATCCCTGATTGGGAAGAAATATGTACTCAAGG
ATGATAATCTATACTGCATCTCCTGCTACGATCGTATCTTTTCTAACTATTGTGAGCAGTGTAAAGAACC
AATTGAATCAGATTCTAAGGATCTTTGCTACAAAAACCGTCACTGGCATGAAGGATGCTTCAGGTGCAAC
AAATGCCATCACTCTTTGGTGGAAAAGCCTTTCGTTGCCAAGGATGATCGCCTGCTGTGCACAGACTGCT
ATTCCAACGAGTGTTCCTCCAAGTGCTTCCACTGCAAGAGAACCATCATGCCAGGTTCTCGGAAAATGGA
ATTTAAGGGCAATTACTGGCATGAAACCTGCTTTGTGTGTGAGCACTGCCGACAGCCAATAGGAACCAAG
CCTTTGATCTCCAAAGAGAGTGGCAATTATTGTGTGCCATGTTTTGAGAAGGAGTTTGCTCATTACTGCA
ACTTCTGTAAGAAGGTGATAACTTCCGGTGGGATAACCTTCCGTGATCAGATATGGCATAAAGAGTGTTT
TCTGTGCAGCGGCTGCAGGAAAGAGCTTTATGAGGAGGCATTTATGTCAAAGGATGATTTCCCATTCTGC
CTGGATTGCTACAACCATCTTTATGCTAAAAAGTGTGCAGCCTGCACCAAACCCATCACTGGCCTCAGAG
GTGCCAAGTTCATCTGCTTTCAAGACCGCCAGTGGCACAGTGAGTGCTTCAACTGCGGAAAGTGCTCGGT
CTCCTTGGTGGGTGAAGGATTCTTGACCCATAACATGGAAATCTTATGCCGCAAGTGTGGCTCCGGGGCA
GACACTGACGCTTAG

Translation (284 aa):
MTSSQFDCQYCTSSLIGKKYVLKDDNLYCISCYDRIFSNYCEQCKEPIESDSKDLCYKNRHWHEGCFRCN
KCHHSLVEKPFVAKDDRLLCTDCYSNECSSKCFHCKRTIMPGSRKMEFKGNYWHETCFVCEHCRQPIGTK
PLISKESGNYCVPCFEKEFAHYCNFCKKVITSGGITFRDQIWHKECFLCSGCRKELYEEAFMSKDDFPFC
LDCYNHLYAKKCAACTKPITGLRGAKFICFQDRQWHSECFNCGKCSVSLVGEGFLTHNMEILCRKCGSGA
DTDA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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