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Report for CCDS20564.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20564.1 Public Mus musculus 6 Ccnd2 23 108 98 CCDS HistoryNCBI Gene:12444Re-query CCDS DB by CCDS ID:20564.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20564.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000188.11 ENSMUSP00000000188.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000188.11Link to Ensembl Protein Viewer:ENSMUSP00000000188.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000000188Re-query CCDS DB by Protein ID:ENSMUSP00000000188
Original member Current member NCBI NM_009829.3 NP_033959.1 Accepted alive Link to Nucleotide Sequence:NM_009829.3Link to Protein Sequence:NP_033959.1Re-query CCDS DB by Nucleotide ID:NM_009829Re-query CCDS DB by Protein ID:NP_033959Link to BLAST:NP_033959.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033959.1 289 P30280 289 100% 0 0

Chromosomal Locations for CCDS 20564.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 127130335 127130487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127139103 127139251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127146023 127146182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127148664 127148879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127150582 127150773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (870 nt):
ATGGAGCTGCTGTGCTGCGAGGTGGACCCGGTCCGCAGGGCCGTGCCGGACCGCAACCTGCTGGAAGACC
GCGTTCTGCAGAACCTGTTGACCATCGAGGAGCGCTACCTCCCGCAGTGTTCCTATTTCAAGTGCGTGCA
GAAGGACATCCAACCGTACATGCGCAGGATGGTGGCCACCTGGATGCTAGAGGTCTGTGAGGAACAAAAG
TGTGAAGAAGAGGTCTTTCCTCTGGCCATGAATTACCTGGACCGTTTCTTGGCTGGAGTCCCGACTCCTA
AGACCCATCTTCAGCTCCTGGGTGCAGTGTGCATGTTCCTAGCTTCCAAGCTGAAAGAGACCATCCCGCT
GACTGCGGAAAAGCTGTGCATTTACACCGACAACTCTGTGAAGCCCCAGGAGCTGCTGGAGTGGGAACTG
GTAGTGTTGGGTAAGCTGAAGTGGAACCTGGCCGCAGTCACCCCTCACGACTTCATTGAGCACATCCTTC
GCAAGCTGCCCCAGCAAAAGGAGAAGCTGTCCCTGATCCGCAAGCATGCGCAGACCTTCATCGCTCTGTG
CGCTACCGACTTCAAGTTTGCCATGTACCCGCCGTCGATGATTGCAACTGGAAGCGTGGGAGCAGCCATC
TGTGGGCTTCAGCAGGATGATGAAGTGAACACACTCACGTGTGATGCCCTGACAGAGCTGCTGGCCAAGA
TCACCCACACTGATGTGGATTGTCTCAAAGCCTGCCAGGAGCAAATCGAAGCTCTGCTGCTGAACAGCCT
GCAGCAGTTCCGTCAAGAGCAGCATAACGCCGGATCCAAGTCTGTGGAAGATCCGGACCAAGCCACCACC
CCTACAGACGTGCGGGATGTTGACCTGTGA

Translation (289 aa):
MELLCCEVDPVRRAVPDRNLLEDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVATWMLEVCEEQK
CEEEVFPLAMNYLDRFLAGVPTPKTHLQLLGAVCMFLASKLKETIPLTAEKLCIYTDNSVKPQELLEWEL
VVLGKLKWNLAAVTPHDFIEHILRKLPQQKEKLSLIRKHAQTFIALCATDFKFAMYPPSMIATGSVGAAI
CGLQQDDEVNTLTCDALTELLAKITHTDVDCLKACQEQIEALLLNSLQQFRQEQHNAGSKSVEDPDQATT
PTDVRDVDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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