NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28850.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28850.1 Public Mus musculus 17 Ccnd3 23 108 98 CCDS HistoryNCBI Gene:12445Re-query CCDS DB by CCDS ID:28850.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28850.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037333.16 ENSMUSP00000040488.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037333.16Link to Ensembl Protein Viewer:ENSMUSP00000040488.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000037333Re-query CCDS DB by Protein ID:ENSMUSP00000040488
Original member Current member EBI ENSMUST00000171031.7 ENSMUSP00000126141.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171031.7Link to Ensembl Protein Viewer:ENSMUSP00000126141.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171031Re-query CCDS DB by Protein ID:ENSMUSP00000126141
Original member Current member EBI ENSMUST00000182209.7 ENSMUSP00000138091.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000182209.7Link to Ensembl Protein Viewer:ENSMUSP00000138091.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000182209Re-query CCDS DB by Protein ID:ENSMUSP00000138091
Original member Current member EBI ENSMUST00000183044.7 ENSMUSP00000138220.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000183044.7Link to Ensembl Protein Viewer:ENSMUSP00000138220.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000183044Re-query CCDS DB by Protein ID:ENSMUSP00000138220
Original member Current member EBI ENSMUST00000183177.7 ENSMUSP00000138640.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000183177.7Link to Ensembl Protein Viewer:ENSMUSP00000138640.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000183177Re-query CCDS DB by Protein ID:ENSMUSP00000138640
Original member Current member NCBI NM_001081635.1 NP_001075104.1 Accepted alive Link to Nucleotide Sequence:NM_001081635.1Link to Protein Sequence:NP_001075104.1Re-query CCDS DB by Nucleotide ID:NM_001081635Re-query CCDS DB by Protein ID:NP_001075104Link to BLAST:NP_001075104.1
Original member Current member NCBI NM_001081636.1 NP_001075105.1 Accepted alive Link to Nucleotide Sequence:NM_001081636.1Link to Protein Sequence:NP_001075105.1Re-query CCDS DB by Nucleotide ID:NM_001081636Re-query CCDS DB by Protein ID:NP_001075105Link to BLAST:NP_001075105.1
Original member Current member NCBI NM_007632.2 NP_031658.1 Accepted alive Link to Nucleotide Sequence:NM_007632.2Link to Protein Sequence:NP_031658.1Re-query CCDS DB by Nucleotide ID:NM_007632Re-query CCDS DB by Protein ID:NP_031658Link to BLAST:NP_031658.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001075104.1 292 P30282 292 100% 0 0
NP_001075105.1 292 P30282 292 100% 0 0
NP_031658.1 292 P30282 292 100% 0 0

Chromosomal Locations for CCDS 28850.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 47593655 47593852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47594734 47594949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47597420 47597579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47598003 47598139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47598609 47598776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (879 nt):
ATGGAGCTGCTGTGTTGCGAGGGCACCCGGCACGCGCCCCGGGCCGGGCCCGACCCGCGGCTGCTTGGGG
ACCAGCGTGTCCTGCAGAGTTTACTCCGCCTGGAGGAGCGCTACGTGCCGCGAGCCTCCTACTTCCAGTG
CGTGCAAAAGGAGATCAAGCCGCACATGCGGAAGATGCTGGCATACTGGATGCTGGAGGTGTGTGAGGAG
CAGCGCTGCGAGGAGGATGTCTTCCCTCTGGCTATGAACTACCTGGATCGCTACCTGTCCTGCGTCCCCA
CCCGAAAGGCGCAATTGCAGCTTCTAGGTACCGTCTGCCTGTTGCTGGCCTCCAAGCTGCGCGAAACCAC
GCCCCTGACTATTGAGAAGCTTTGCATCTATACGGACCAGGCTGTGGCTCCATGGCAGTTGCGGGAGTGG
GAGGTGCTGGTCCTGGGGAAGCTCAAGTGGGACCTGGCTGCCGTGATTGCGCACGACTTCCTGGCCTTGA
TTCTGCACCGCCTGTCTCTGCCCAGTGACCGGCAGGCTTTGGTCAAAAAGCATGCCCAGACCTTTTTGGC
CCTCTGTGCTACAGATTACACCTTTGCGATGTATCCTCCATCCATGATCGCCACAGGCAGCATTGGGGCA
GCCGTGCTAGGCCTAGGCGCCTGCTCTATGTCTGCGGATGAGCTCACAGAGTTGCTGGCCGGGATCACAG
GCACTGAAGTGGACTGCCTGCGAGCCTGCCAGGAACAGATCGAAGCTGCCCTCAGGGAGAGCCTCAGGGA
AGCTGCTCAGACAGCCCCCAGCCCAGTGCCCAAAGCCCCCCGGGGCTCTAGCAGCCAGGGGCCCAGTCAG
ACCAGCACTCCCACAGATGTCACAGCCATTCACCTGTAG

Translation (292 aa):
MELLCCEGTRHAPRAGPDPRLLGDQRVLQSLLRLEERYVPRASYFQCVQKEIKPHMRKMLAYWMLEVCEE
QRCEEDVFPLAMNYLDRYLSCVPTRKAQLQLLGTVCLLLASKLRETTPLTIEKLCIYTDQAVAPWQLREW
EVLVLGKLKWDLAAVIAHDFLALILHRLSLPSDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGA
AVLGLGACSMSADELTELLAGITGTEVDCLRACQEQIEAALRESLREAAQTAPSPVPKAPRGSSSQGPSQ
TSTPTDVTAIHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH