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Report for CCDS18804.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18804.1 Public Mus musculus 4 Zfp46 23 108 98 CCDS HistoryNCBI Gene:22704Re-query CCDS DB by CCDS ID:18804.1Re-query CCDS DB by GeneID:22704See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18804.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069195.4 ENSMUSP00000070216.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069195.4Link to Ensembl Protein Viewer:ENSMUSP00000070216.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000069195Re-query CCDS DB by Protein ID:ENSMUSP00000070216
Original member NCBI NM_001356308.1 NP_001343237.1 Updated not alive Link to Nucleotide Sequence:NM_001356308.1Link to Protein Sequence:NP_001343237.1Re-query CCDS DB by Nucleotide ID:NM_001356308Re-query CCDS DB by Protein ID:NP_001343237
Current member NCBI NM_001356308.2 NP_001343237.1 Accepted alive Link to Nucleotide Sequence:NM_001356308.2Link to Protein Sequence:NP_001343237.1Re-query CCDS DB by Nucleotide ID:NM_001356308Re-query CCDS DB by Protein ID:NP_001343237Link to BLAST:NP_001343237.1
Original member NCBI NM_009557.4 NP_033583.2 Updated not alive Link to Nucleotide Sequence:NM_009557.4Link to Protein Sequence:NP_033583.2Re-query CCDS DB by Nucleotide ID:NM_009557Re-query CCDS DB by Protein ID:NP_033583
Current member NCBI NM_009557.5 NP_033583.2 Accepted alive Link to Nucleotide Sequence:NM_009557.5Link to Protein Sequence:NP_033583.2Re-query CCDS DB by Nucleotide ID:NM_009557Re-query CCDS DB by Protein ID:NP_033583Link to BLAST:NP_033583.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343237.1 452 Q8BPP0 452 100% 0 0
NP_033583.2 452 Q8BPP0 452 100% 0 0

Chromosomal Locations for CCDS 18804.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 136287210 136287315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136289963 136291215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1359 nt):
ATGGCCATGTACCTCACTCGGGAAGAATGGAGACCTCTGGATCCTACACAGAGAGATCTTTACAGGGATG
TGATGCAGGAGAATTACGGAAATGTTGTCTCACTGGATTTTGAGATCAGGAGCGAGAATGAAGCCAACCC
CAAACAGGAGTTTAGTGACGATGTGGAATTCGCGACCATGTCGGAAGAGCCTCTTGAGAATGCCGAGAAG
AATCCTGGAAGCGAAGAGGCCTTCGAAAGTGGGGACCAGGCAGAAAGGCCGTGGGGAGACCTGACAGCGG
AGGAGTGGGTCAGCTACCCTCTCCAGCAAGTCACTGACCTGCTTGTCCACAAGGAAGCGCACGCGGGCAT
CCGCTACCACATTTGTTCTCAGTGTGGGAAAGCCTTCAGTCAGATTTCAGACCTCAATCGCCACCAGAAG
ACGCACACGGGAGACAGGCCCTACAAGTGCTACGAGTGCGGGAAGGGCTTCAGCCGCAGCTCCCACCTCA
TCCAGCACCAGAGGACGCACACGGGCGAGCGGCCCTACGACTGCAACGAGTGCGGGAAAAGCTTCGGCCG
CAGCTCGCACCTCATCCAGCACCAGACGATCCACACCGGCGAGAAGCCTCACAAGTGCACCGAGTGCGGC
AAAAGCTTCTGCCGCCTCTCCCACCTCATCCAGCACCAGCGGACCCACAGCGGGGAGAAGCCGTACGAGT
GCGAGGAGTGCGGCAAGAGCTTCAGCCGCAGCTCCCACCTCGCCCAGCACCAGCGGACTCACACGGGCGA
GAAGCCCTACGAGTGCCACGAGTGCGGGCGGGGCTTCAGCGAGCGCTCCGACCTCATCAAGCACTACCGC
GTGCACACCGGGGAGCGGCCCTACAAGTGCGACGAGTGCGGGAAGAACTTCAGCCAGAACTCCGACCTGG
TGCGGCACCGCCGGGCGCACACCGGGGAGAAGCCCTACCACTGTAACGAGTGCGGGGAAAACTTCAGCCG
CATCTCCCACCTCGTCCAGCACCAGCGGACTCACACGGGCGAGAAGCCGTACGAGTGCACGGCCTGCGGG
AAGAGCTTCAGCCGCAGCTCGCACCTCATCACGCACCAGAAGATCCACACCGGGGAGAAGCCCTACGAGT
GTAACGAGTGCTGGCGAAGCTTTGGGGAAAGGTCCGACCTCATCAAGCACCAGCGAACCCACACGGGAGA
AAAGCCCTACGAATGTGTGCAGTGCGGAAAGGGCTTCACGCAGAGCTCCAACCTCATCACGCATCAGAGA
GTGCACACAGGAGAGAAGCCTTACGAATGTACCGAGTGTGATAAGAGTTTCAGCCGGAGCTCAGCGCTTA
TTAAACACAAGAGAGTTCATACCGACTAG

Translation (452 aa):
MAMYLTREEWRPLDPTQRDLYRDVMQENYGNVVSLDFEIRSENEANPKQEFSDDVEFATMSEEPLENAEK
NPGSEEAFESGDQAERPWGDLTAEEWVSYPLQQVTDLLVHKEAHAGIRYHICSQCGKAFSQISDLNRHQK
THTGDRPYKCYECGKGFSRSSHLIQHQRTHTGERPYDCNECGKSFGRSSHLIQHQTIHTGEKPHKCTECG
KSFCRLSHLIQHQRTHSGEKPYECEECGKSFSRSSHLAQHQRTHTGEKPYECHECGRGFSERSDLIKHYR
VHTGERPYKCDECGKNFSQNSDLVRHRRAHTGEKPYHCNECGENFSRISHLVQHQRTHTGEKPYECTACG
KSFSRSSHLITHQKIHTGEKPYECNECWRSFGERSDLIKHQRTHTGEKPYECVQCGKGFTQSSNLITHQR
VHTGEKPYECTECDKSFSRSSALIKHKRVHTD


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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