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Report for CCDS42320.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42320.1 Public Homo sapiens 17 KRT40 24 110 108 CCDS HistoryNCBI Gene:125115Re-query CCDS DB by CCDS ID:42320.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42320.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377755.9 ENSP00000366984.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377755.9Link to Ensembl Protein Viewer:ENSP00000366984.4Re-query CCDS DB by Nucleotide ID:ENST00000377755Re-query CCDS DB by Protein ID:ENSP00000366984
Original member Current member EBI ENST00000398486.2 ENSP00000381500.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398486.2Link to Ensembl Protein Viewer:ENSP00000381500.2Re-query CCDS DB by Nucleotide ID:ENST00000398486Re-query CCDS DB by Protein ID:ENSP00000381500
Original member Current member EBI ENST00000684280.1 ENSP00000506768.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000684280.1Link to Ensembl Protein Viewer:ENSP00000506768.1Re-query CCDS DB by Nucleotide ID:ENST00000684280Re-query CCDS DB by Protein ID:ENSP00000506768
Original member Current member NCBI NM_001385217.1 NP_001372146.1 Accepted alive Link to Nucleotide Sequence:NM_001385217.1Link to Protein Sequence:NP_001372146.1Re-query CCDS DB by Nucleotide ID:NM_001385217Re-query CCDS DB by Protein ID:NP_001372146Link to BLAST:NP_001372146.1
Original member Current member NCBI NM_001389244.1 NP_001376173.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001389244.1Link to Protein Sequence:NP_001376173.1Re-query CCDS DB by Nucleotide ID:NM_001389244Re-query CCDS DB by Protein ID:NP_001376173Link to BLAST:NP_001376173.1
Original member Current member NCBI NM_182497.4 NP_872303.2 Accepted alive Link to Nucleotide Sequence:NM_182497.4Link to Protein Sequence:NP_872303.2Re-query CCDS DB by Nucleotide ID:NM_182497Re-query CCDS DB by Protein ID:NP_872303Link to BLAST:NP_872303.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001372146.1 431 Q6A162 431 100% 0 0
NP_001376173.1 431 Q6A162 431 100% 0 0
NP_872303.2 431 Q6A162 431 100% 0 0

Chromosomal Locations for CCDS 42320.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 40978197 40978296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40978804 40979024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40980785 40980910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40980990 40981151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40982307 40982463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40983046 40983128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40983827 40984273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1296 nt):
ATGACTTCTGACTGCTCCTCCACACACTGCTCTCCTGAGTCCTGTGGCACGGCTTCCGGTTGTGCACCTG
CCTCAAGCTGCTCCGTGGAAACAGCTTGTCTCCCCGGTACCTGTGCTACATCCCGATGTCAGACTCCAAG
CTTCCTATCCAGGTCTCGCGGGCTGACTGGTTGCCTCCTGCCATGCTACTTTACTGGGAGTTGTAATAGT
CCCTGCTTGGTGGGGAACTGTGCCTGGTGTGAGGATGGGGTGTTCACTAGCAATGAGAAGGAGACGATGC
AGTTCCTGAATGACAGACTCGCCAGCTATCTGGAGAAGGTGCGCAGCCTGGAGGAGACCAACGCAGAGCT
GGAATCCAGGATCCAAGAACAATGTGAACAGGATATCCCAATGGTGTGCCCGGATTATCAGCGTTACTTC
AACACCATTGAAGATCTCCAACAAAAGATCTTATGCACGAAAGCAGAGAATTCTAGACTTGCTGTACAGC
TTGACAACTGCAAACTGGCCACTGATGACTTTAAGTCAAAGTACGAGAGTGAACTGTCCCTTCGCCAGCT
GTTAGAGGCTGACATCAGCAGCCTGCATGGGATCCTGGAGGAACTGACCCTGTGCAAATCTGATCTGGAG
GCCCATGTGGAGTCTCTGAAGGAAGATCTCCTTTGCCTTAAGAAAAACCATGAAGAGGAAGTCAACTTGC
TTCGTGAACAGCTTGGCGACCGCCTCAGTGTGGAGCTGGACACTGCCCCCACCCTTGACCTCAACAGGGT
CCTGGATGAGATGCGCTGTCAGTGTGAAACGGTGCTTGCCAACAATCGCAGAGAAGCTGAAGAATGGTTG
GCTGTTCAGACAGAAGAGCTGAATCAGCAGCAACTGTCCAGCGCGGAGCAGCTGCAGGGCTGCCAGATGG
AGATCTTGGAACTGAAACGCACAGCCAGTGCTCTGGAAATTGAGCTCCAAGCACAGCAAAGCCTGACAGA
ATCTCTGGAATGCACCGTGGCAGAAACCGAGGCCCAGTACAGCTCCCAGCTGGCCCAAATTCAGTGTCTG
ATCGATAACCTGGAGAACCAGCTGGCCGAGATCCGCTGCGACCTGGAGCGACAGAACCAGGAGTACCAGG
TGCTCCTGGACGTGAAGGCCCGGCTGGAGGGTGAGATCAACACGTACTGGGGCCTGCTGGACAGCGAGGA
CAGCAGGCTTTCCTGTAGCCCATGTTCGACCACATGCACCTCGAGCAACACTTGTGAGCCATGCTCAGCC
TATGTCATCTGCACTGTTGAAAACTGCTGCTTGTGA

Translation (431 aa):
MTSDCSSTHCSPESCGTASGCAPASSCSVETACLPGTCATSRCQTPSFLSRSRGLTGCLLPCYFTGSCNS
PCLVGNCAWCEDGVFTSNEKETMQFLNDRLASYLEKVRSLEETNAELESRIQEQCEQDIPMVCPDYQRYF
NTIEDLQQKILCTKAENSRLAVQLDNCKLATDDFKSKYESELSLRQLLEADISSLHGILEELTLCKSDLE
AHVESLKEDLLCLKKNHEEEVNLLREQLGDRLSVELDTAPTLDLNRVLDEMRCQCETVLANNRREAEEWL
AVQTEELNQQQLSSAEQLQGCQMEILELKRTASALEIELQAQQSLTESLECTVAETEAQYSSQLAQIQCL
IDNLENQLAEIRCDLERQNQEYQVLLDVKARLEGEINTYWGLLDSEDSRLSCSPCSTTCTSSNTCEPCSA
YVICTVENCCL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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