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Report for CCDS36022.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36022.1 Public Mus musculus 10 Parpbp 23 108 98 CCDS HistoryNCBI Gene:75317Re-query CCDS DB by CCDS ID:36022.1Re-query CCDS DB by GeneID:75317See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36022.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048518.15 ENSMUSP00000038375.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048518.15Link to Ensembl Protein Viewer:ENSMUSP00000038375.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000048518Re-query CCDS DB by Protein ID:ENSMUSP00000038375
Original member Current member NCBI NM_029249.2 NP_083525.1 Accepted alive Link to Nucleotide Sequence:NM_029249.2Link to Protein Sequence:NP_083525.1Re-query CCDS DB by Nucleotide ID:NM_029249Re-query CCDS DB by Protein ID:NP_083525Link to BLAST:NP_083525.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083525.1 573 Q6IRT3 573 99.8255% 0 1

Chromosomal Locations for CCDS 36022.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 88092855 88093186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88093595 88093727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88110299 88110380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88111596 88111774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88114521 88114701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88124808 88124962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88126157 88126327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88133094 88133198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88139866 88140096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88143940 88144092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1722 nt):
ATGGCTGTGCTTAATCAGCTGCCCGTCTTGGGTATGATTAAAGAGTTTAGGAGGAGTTGGCGTGCTCTTT
GTAGCTCTGAAAGAACTACGTTATGCGGTCCAGACTCCATGCTCCTGGCCCTGCAGCTGTCCATGGCAGA
AAACAACAAACAGCACAGAGGAGAATTTACAGTCTGTCTCAGTGATGTCTTACTGACATGGAAGTACTTC
TTACACGAGAAACTGAACTTGCCCATTGAAAATATGAAAGTGGTTGAGCACTATGAAGACATTAAGAAAA
CATATGATGATTTCTTGAAGAACAGTAATACACTAGATCTGATTGATGTTTATAAAAAATGTAGCAGCTT
GACCTCTAATTATGAGAATAACATGATTTCCCCTATTCAACTCCGGGATTTTCTGTCTGGCACAGAGTAT
GCAGTCAGTGACGAAGCTAATCCTCACATGCCAGAGTCACCAGTAAAATGCAGCCAGAATGACGAGCAGG
TACGGGTATTGGTAAAGAAAATTTTCTTTTCATATTTGAGCCTGCTAGTGAATTCAAAGAATGACCTGGC
TTTGGCTTCCATTCTCAACATCCCTGATCGAGGACTGGGGAGAGAGGCCTTCACCAACTTGAAGCATGCT
GCTCGAGAGAAACAGTTGTCTATGTTTCTGATGGCCACGTCATTTATCAGGACATTGGAACTTGGAGGAA
AAGGATATGCGCCGTCACCATCAGATCCTCTGTGGGCGCATGTAAAAGGCCTGTCGGAGTTTATTAATTT
CATTGACAAGCTAGATGAAATTCTTGGAAAGATACCAAATCCAAGCCTTGCAGGGAGTCGGATATTATCA
GCGATAAAGATGCAGCTGATCAAAGGCCACAGCAGTGGGGAGCCTTTTTATAAAGCAGTAGAGGAAGTTG
TTCAGGATTTGAATTTGAGGATTAAAAATATTATTAATTCTCAAGAAGGTGTAGCTGTCAGCGCCAACAA
CATCAGTCCTGTCCCGCCAAAATCTTTTGCTATAAACCATGATACTGCCTACTGTGGCAGAGATGCTGTG
AAAATTTTGCTGGTCCTTTTGGATGAAGATGCAGCCAGTGCTCCTACCAGAAATAAAGCAGAGCTTTTAT
ACAATGACGAAAGTACAGTTCCTCATAGTGGACCATCTGTTCTCACACTCTTTAGGTCTCCCACACAAGA
GAAAAACACATCAGTTAAACCTCTCAGAGAGCGAATCCATAAGTCACTGCAAACAGAGAAAAATAAGATG
TGGCAGACATTAATTAGATCACAGTTTGCTTGTACTTATAAAGATGACTGCATAATGAGCAAGAATAAAT
GGCATGTTAACTCATCATCAAAGCCCTTGTCTGCTCTTCACTTGGAAGATGATGTTTCTGAGGGAGCACA
GTCATCTGTTGGAAAAGCAAGAATTGAAGCAAGTTCTGAAAATGCCCACGTGGGCAGATGGAAGGGTGAC
AAACTACCAAGAAAATCTACACAAAGGCAGATATCGAAGAGGAAACAGCTGGACTTAGACAGTGAGAATC
TTCACTGTGACCGTGGAAATGAACTGTACCAACATAAGAACATTAAGATCCCTAAAGTGCCCAGTGGCTC
ACACAGTAAAGCTGGTGGCAAACTTGCCCAAGGAACAAAAGGCAATAGGTGTCCTGCCAGGGGCAAGTTG
ATTCCTGGCCAGACCAAGTTGACGCAGTTTTTTATGCTATGA

Translation (573 aa):
MAVLNQLPVLGMIKEFRRSWRALCSSERTTLCGPDSMLLALQLSMAENNKQHRGEFTVCLSDVLLTWKYF
LHEKLNLPIENMKVVEHYEDIKKTYDDFLKNSNTLDLIDVYKKCSSLTSNYENNMISPIQLRDFLSGTEY
AVSDEANPHMPESPVKCSQNDEQVRVLVKKIFFSYLSLLVNSKNDLALASILNIPDRGLGREAFTNLKHA
AREKQLSMFLMATSFIRTLELGGKGYAPSPSDPLWAHVKGLSEFINFIDKLDEILGKIPNPSLAGSRILS
AIKMQLIKGHSSGEPFYKAVEEVVQDLNLRIKNIINSQEGVAVSANNISPVPPKSFAINHDTAYCGRDAV
KILLVLLDEDAASAPTRNKAELLYNDESTVPHSGPSVLTLFRSPTQEKNTSVKPLRERIHKSLQTEKNKM
WQTLIRSQFACTYKDDCIMSKNKWHVNSSSKPLSALHLEDDVSEGAQSSVGKARIEASSENAHVGRWKGD
KLPRKSTQRQISKRKQLDLDSENLHCDRGNELYQHKNIKIPKVPSGSHSKAGGKLAQGTKGNRCPARGKL
IPGQTKLTQFFML


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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