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Report for CCDS59375.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59375.1 Public Homo sapiens 19 WTIP 24 110 108 CCDS HistoryNCBI Gene:126374Re-query CCDS DB by CCDS ID:59375.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 12, NCBI annotation release 104, Ensembl annotation release 71

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59375.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000590071.7 ENSP00000466953.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000590071.7Link to Ensembl Protein Viewer:ENSP00000466953.2Re-query CCDS DB by Nucleotide ID:ENST00000590071Re-query CCDS DB by Protein ID:ENSP00000466953
Original member Current member NCBI NM_001080436.2 NP_001073905.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080436.2Link to Protein Sequence:NP_001073905.1Re-query CCDS DB by Nucleotide ID:NM_001080436Re-query CCDS DB by Protein ID:NP_001073905Link to BLAST:NP_001073905.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073905.1 430 A6NIX2 430 100% 0 0

Chromosomal Locations for CCDS 59375.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 34481975 34482641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34490376 34490477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34493037 34493104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34493263 34493325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34493492 34493622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34494586 34494637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34495703 34495771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34500129 34500269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1293 nt):
ATGCAGCGCTCCAGGGCGGGCGCGGACGAGGCGGCCCTACTCCTGGCCGGGCTGGCCCTGCGGGAGCTGG
AGCCCGGGTGCGGCTCTCCCGGTCGGGGGCGGCGGGGGCCGCGGCCTGGGCCTGGAGACGAGGCGGCGCC
CGCGCTGGGCCGCAGAGGGAAGGGCAGCGGCGGCCCCGAGGCCGGGGCGGACGGACTGAGCCGCGGGGAG
CGGGGTCCCCGGCGCGCGGCGGTTCCGGAGCTCAGCGCGCAGCCTGCGGGCAGCCCACGGGCCAGCCTGG
CGGGGTCCGACGGCGGCGGCGGTGGCGGCAGCGCCCGATCCAGCGGCATCAGCCTGGGCTACGACCAGCG
CCACGGCAGCCCGCGCTCCGGTCGCTCGGACCCGCGTCCCGGTCCCGGGCCGCCTTCGGTGGGCAGCGCC
CGCTCCAGCGTTTCCAGCCTCGGCTCCCGGGGCTCGGCCGGCGCCTACGCTGACTTCCTCCCGCCCGGCG
CCTGCCCCGCGCCCGCTCGCTCCCCGGAGCCTGCGGGGCCGGCTCCCTTCCCGCTGCCTGCACTCCCGCT
GCCCCCTGGCCGGGAGGGCGGCCCAAGCGCGGCCGAGCGGCGGCTGGAGGCGCTCACCCGGGAGCTGGAG
CGGGCGCTCGAGGCGCGCACGGCGCGGGACTACTTCGGCATTTGCATCAAGTGTGGGCTTGGCATCTACG
GAGCCCAGCAGGCGTGCCAGGCAATGGGGAGTCTTTATCACACTGACTGCTTCACCTGCGACTCGTGTGG
GAGACGACTCCGTGGGAAGGCGTTCTACAACGTGGGTGAGAAAGTGTACTGCCAGGAGGACTTCCTGTAC
TCCGGGTTCCAGCAGACGGCCGACAAATGCAGCGTGTGTGGACATCTCATCATGGAAATGATCCTGCAGG
CCCTGGGCAAGTCCTACCACCCAGGCTGCTTCCGGTGCTCCGTGTGCAATGAGTGCCTGGACGGGGTTCC
CTTCACCGTGGACGTGGAGAACAACATCTACTGCGTGCGAGACTATCACACGGTTTTTGCACCAAAATGC
GCCTCCTGTGCCCGTCCTATCCTCCCTGCACAGGGCTGCGAGACAACCATCCGTGTGGTGTCCATGGACA
GAGACTACCACGTGGCATGTTACCACTGTGAGGACTGCGGGCTGCAGCTGAGCGGGGAGGAGGGACGCCG
TTGCTATCCCCTGGCGGGCCACCTACTGTGTCGTCGTTGCCACCTGCGGCGCCTCCAACCTGGGCCTCTT
CCCTCACCCACTGTGCACGTCACTGAGCTCTGA

Translation (430 aa):
MQRSRAGADEAALLLAGLALRELEPGCGSPGRGRRGPRPGPGDEAAPALGRRGKGSGGPEAGADGLSRGE
RGPRRAAVPELSAQPAGSPRASLAGSDGGGGGGSARSSGISLGYDQRHGSPRSGRSDPRPGPGPPSVGSA
RSSVSSLGSRGSAGAYADFLPPGACPAPARSPEPAGPAPFPLPALPLPPGREGGPSAAERRLEALTRELE
RALEARTARDYFGICIKCGLGIYGAQQACQAMGSLYHTDCFTCDSCGRRLRGKAFYNVGEKVYCQEDFLY
SGFQQTADKCSVCGHLIMEMILQALGKSYHPGCFRCSVCNECLDGVPFTVDVENNIYCVRDYHTVFAPKC
ASCARPILPAQGCETTIRVVSMDRDYHVACYHCEDCGLQLSGEEGRRCYPLAGHLLCRRCHLRRLQPGPL
PSPTVHVTEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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