NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS20.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20.1 Public Homo sapiens 1 PUSL1 24 110 108 CCDS HistoryNCBI Gene:126789Re-query CCDS DB by CCDS ID:20.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379031.10 ENSP00000368318.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000379031.10Link to Ensembl Protein Viewer:ENSP00000368318.5Re-query CCDS DB by Nucleotide ID:ENST00000379031Re-query CCDS DB by Protein ID:ENSP00000368318
Original member Current member NCBI NM_153339.3 NP_699170.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153339.3Link to Protein Sequence:NP_699170.1Re-query CCDS DB by Nucleotide ID:NM_153339Re-query CCDS DB by Protein ID:NP_699170Link to BLAST:NP_699170.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_699170.1 303 Q8N0Z8-1 303 100% 0 0

Chromosomal Locations for CCDS 20.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 1308644 1308720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1308915 1308972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1309086 1309273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1309454 1309603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1309681 1309851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1310634 1310688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1310909 1311071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1311330 1311379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (912 nt):
ATGAGTTCGGCGCCGGCCTCAGGCTCCGTGCGCGCGCGCTATCTTGTGTACTTCCAGTACGTGGGCACCG
ACTTTAACGGGGTCGCGGCCGTCAGGGGCACTCAGCGCGCCGTCGGGGTCCAGAACTACCTGGAGGAGGC
CGCCGAGCGGCTGAATTCCGTGGAGCCGGTCAGGTTCACCATCTCCAGCCGCACGGACGCCGGGGTCCAC
GCCCTGAGCAACGCGGCGCACCTGGACGTCCAGCGCCGCTCAGGCCGGCCGCCCTTCCCGCCCGAGGTCC
TGGCCGAGGCCCTCAACACACACCTGCGGCACCCGGCCATCAGGGTCCTGCGGGCCTTCCGAGTGCCCAG
CGACTTCCACGCTCGTCACGCAGCCACGTCCCGGACCTACCTGTACCGCCTGGCCACTGGCTGTCACCGG
CGTGATGAGCTGCCGGTGTTTGAACGCAACCTATGCTGGACTCTCCCGGCAGACTGCCTGGATATGGTCG
CCATGCAGGAAGCCGCCCAGCACCTCCTCGGCACACACGACTTCAGCGCCTTCCAGTCCGCTGGCAGCCC
GGTGCCGAGCCCCGTGCGAACGCTGCGCCGGGTCTCCGTTTCCCCAGGCCAAGCCAGCCCCTTGGTCACC
CCCGAGGAGAGCAGGAAGCTGCGGTTCTGGAACCTGGAGTTTGAGAGCCAGTCTTTCCTGTATAGACAGG
TACGGAGGATGACGGCTGTGCTGGTGGCCGTGGGGCTGGGGGCTTTGGCACCTGCCCAGGTGAAGACGAT
TCTGGAGAGCCAAGATCCCCTGGGCAAGCACCAGACACGTGTAGCCCCAGCCCACGGCTTATTCCTCAAG
TCAGTGCTGTACGGGAACCTCGGTGCTGCCTCCTGCACCCTGCAGGGGCCACAGTTCGGGAGCCACGGAT
GA

Translation (303 aa):
MSSAPASGSVRARYLVYFQYVGTDFNGVAAVRGTQRAVGVQNYLEEAAERLNSVEPVRFTISSRTDAGVH
ALSNAAHLDVQRRSGRPPFPPEVLAEALNTHLRHPAIRVLRAFRVPSDFHARHAATSRTYLYRLATGCHR
RDELPVFERNLCWTLPADCLDMVAMQEAAQHLLGTHDFSAFQSAGSPVPSPVRTLRRVSVSPGQASPLVT
PEESRKLRFWNLEFESQSFLYRQVRRMTAVLVAVGLGALAPAQVKTILESQDPLGKHQTRVAPAHGLFLK
SVLYGNLGAASCTLQGPQFGSHG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH