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Report for CCDS52835.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52835.1 Public Mus musculus 9 Igdcc3 23 108 98 CCDS HistoryNCBI Gene:19289Re-query CCDS DB by CCDS ID:52835.1Re-query CCDS DB by GeneID:19289See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52835.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034961.5 ENSMUSP00000034961.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034961.5Link to Ensembl Protein Viewer:ENSMUSP00000034961.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000034961Re-query CCDS DB by Protein ID:ENSMUSP00000034961
Original member Current member NCBI NM_008988.3 NP_033014.1 Accepted alive Link to Nucleotide Sequence:NM_008988.3Link to Protein Sequence:NP_033014.1Re-query CCDS DB by Nucleotide ID:NM_008988Re-query CCDS DB by Protein ID:NP_033014Link to BLAST:NP_033014.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033014.1 793 Q8BQC3-2 793 100% 0 0

Chromosomal Locations for CCDS 52835.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 65141415 65141553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65144256 65144561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65177395 65177539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65177866 65177996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65178376 65178513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65180041 65180199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65181136 65181301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65181525 65181772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65181956 65182120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65182702 65182893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65183000 65183104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65183833 65183911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65184033 65184240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65185134 65185334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2382 nt):
ATGGCTGAGCCGCGCACCGCGTCCCCGCGCCGCCTGCCCGCGCTGCGCCGGCCCGGGTTTCTGCCGCCGT
TGCTGCCGCCGCCGCCGCCGCCGCTGCTGTTGCTGCTGCTGCTGTTGCCGCTGCCTGCGCCAAGCCTGGG
TCTGGGCCATTCTGCTGAACTGGCATTTTCTGTGGAGCCAAATGATGATATTGCCAACCCTGGGCAGCCC
ATAGTGCTGGGCTGCAAAGTGGAGGGCACCCCTCCAGTGCAAGTCTCCTGGAGGAAGAATGGAGCAGAGC
TACCAGAGGGCACCCACACCACTCTGCTGGCCAATGGCTCCTTGCTGATCCACCACTTCAGGCTGGAGCA
AGGAGGTAGCCCTTCAGATGAGGGTGACTATGAATGTGTGGCTCAGAACCGCTTTGGGCTGCTGGTCAGT
CGGAAGGCTCGTCTCCAGGCTGCAACTATGTCCGACTTCCACGTACACCCCCAGGCCGTCACGGGTGAGG
AGGGTGGTGTGGCCCGCTTCCAGTGCCAAATCCATGGGCTTCCCAAGCCCCTGATCACATGGGAGAAGAA
CAGAGTTCCCATTGACACGGACGATGAGAGGTACACACTACTGCCCAAGGGAGTCCTGCAGATAACAGGA
CTTCGGGCTGAGGACAGCGGCATCTTCCACTGTGTGGCCTCAAACATTGCTAGTGTGCGGGTCAGCCACG
GGGCCAGGCTCACTGTGTCAGGCTCGGGCTCAGGGACCTACAAGGAGCCCACCATTCTTGTGGGGCCTGA
GAACCTCACCCTGACAGTGCACCAGACTGCGGTGCTGGAGTGTGTCGCCACGGGCAACCCGCGCCCCATT
GTGTCCTGGAGCCGCTTGGATGGCCGCCCCATTGGGGTGGAGGGCATCCAGGTGCTGGGCACAGGAAACC
TTATCATCTCAGATGTGACTGTCCAGCATTCAGGTGTCTATGTCTGTGCAGCCAACAGGCCTGGCACCCG
GGTGAGAAGGACGGCCCAGGGTCGGCTGGTGGTACAAGCTCCAGCAGAGTTTGTTCAGCATCCCCAGTCC
ATCTCCAGGCCTGCTGGGACCACAGCCATGTTCACCTGCCAAGCGCAGGGGGAGCCACCGCCTCATGTCA
CATGGTTGAAGAATGGACAAGTGCTGGGGGCAGGAGGCCATGTCAGGCTCAAGAACAATAACAGCACACT
GAGCATTTCTGGAGTCGGACCTGAAGATGAGGCCATCTACCAATGTGTGGCTGAGAACATTGCTGGCTCG
TCGCAAGCCAGCGCCAGGCTGACCGTGCTGTGGGCTGAGGGGTTGCCAGGCCCCCCACGCAATGTCCGAG
CTGTCTCTGTGTCCTCCACTGAAGTTCGAGTGTCCTGGAGTGAGCCTCTGGCCCACACCAAAGAGATCAT
TGGCTATGTCTTGCACATCAGGAAGGCTGCCGACTCACCCAAGCTAGAGTACCAGGAAGCTGTCAGCAAG
AGCACCTTTCAGCACCTGGTGAGAGACCTTGAGCCCTCCACTGCCTACAGCTTCTACATCAAAGCCTACA
CACCACGAGGGGCCAGTTTAGCCTCTGTCCCCACCCTGGCCAGCACCCTGGGTGAAGCCCCTGTCCCACC
CCCATTATCTGTGCGGTTGCTGGGCAGCTCCTCTCTACAACTGCTATGGAAGCCCTGGCCACGGCTGGCC
CAACACAATGGAGGCTTCAAGCTGTTTTACCGCCCAGTCAGTGCAACCTCCTTCACTGGCCCCATCTTGC
TCCCTGGGACTGTCTCCTCTTACAACCTCAGCCAGCTTGACCCCAGCACCGTGTACGAGGTGAAGCTCCT
GGCCTACAACCAGCATGGAGATGGAAACGCCACGGTCCGATTTGTGTCTCTGAAGGGAGCCTCTGAGAGG
ACAGGCATTGTTATCGGCATCCACATCGGAGTCACCTGCATCATCTTCTGCGTCCTCTTTCTTCTGTTTG
GCCAGAGGGGCAGGGTCCTCCTGTGTAAGGATGTGGAAAACCAGCTCTCCCCTCCCCAGGGTCCCCGGAG
CCAGAGGGACCCTGGTATCCTGGCCCTGAATGGACTGAGCCGAGGAGAAGGGGGCCAGCTGAGCCGAGAT
GAAAAGCCGGTGGACGCCAAGGAGTTGGAACAGCTGTTTCCCACAGCTGGGTCAGCTGCACAGCCAGGCT
CCACACCCACGGATCCTGCAGCCCCTGCTCCATGTGAGGAGACCCAGCTCTCCATGGTTCAGCTTCAAGG
CTTCAACCTTGTGGCAGGGAGGACAACAGAGGCCACGTCCCCCTGTGCAGGGCCTGGGCCTGTCCCAGCA
CCCCAGGATATAGGCCCTGTCCCCCTCAGTGAAGGACAGACCCAGCCTCCAGCAGTCGCAGCACCCCAGT
GA

Translation (793 aa):
MAEPRTASPRRLPALRRPGFLPPLLPPPPPPLLLLLLLLPLPAPSLGLGHSAELAFSVEPNDDIANPGQP
IVLGCKVEGTPPVQVSWRKNGAELPEGTHTTLLANGSLLIHHFRLEQGGSPSDEGDYECVAQNRFGLLVS
RKARLQAATMSDFHVHPQAVTGEEGGVARFQCQIHGLPKPLITWEKNRVPIDTDDERYTLLPKGVLQITG
LRAEDSGIFHCVASNIASVRVSHGARLTVSGSGSGTYKEPTILVGPENLTLTVHQTAVLECVATGNPRPI
VSWSRLDGRPIGVEGIQVLGTGNLIISDVTVQHSGVYVCAANRPGTRVRRTAQGRLVVQAPAEFVQHPQS
ISRPAGTTAMFTCQAQGEPPPHVTWLKNGQVLGAGGHVRLKNNNSTLSISGVGPEDEAIYQCVAENIAGS
SQASARLTVLWAEGLPGPPRNVRAVSVSSTEVRVSWSEPLAHTKEIIGYVLHIRKAADSPKLEYQEAVSK
STFQHLVRDLEPSTAYSFYIKAYTPRGASLASVPTLASTLGEAPVPPPLSVRLLGSSSLQLLWKPWPRLA
QHNGGFKLFYRPVSATSFTGPILLPGTVSSYNLSQLDPSTVYEVKLLAYNQHGDGNATVRFVSLKGASER
TGIVIGIHIGVTCIIFCVLFLLFGQRGRVLLCKDVENQLSPPQGPRSQRDPGILALNGLSRGEGGQLSRD
EKPVDAKELEQLFPTAGSAAQPGSTPTDPAAPAPCEETQLSMVQLQGFNLVAGRTTEATSPCAGPGPVPA
PQDIGPVPLSEGQTQPPAVAAPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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