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Report for CCDS30437.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30437.1 Public Mus musculus X Cldn2 23 108 98 CCDS HistoryNCBI Gene:12738Re-query CCDS DB by CCDS ID:30437.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30437.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054889.3 ENSMUSP00000054219.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054889.3Link to Ensembl Protein Viewer:ENSMUSP00000054219.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000054889Re-query CCDS DB by Protein ID:ENSMUSP00000054219
Original member NCBI NM_016675.4 NP_057884.1 Updated not alive Link to Nucleotide Sequence:NM_016675.4Link to Protein Sequence:NP_057884.1Re-query CCDS DB by Nucleotide ID:NM_016675Re-query CCDS DB by Protein ID:NP_057884
Current member NCBI NM_016675.5 NP_057884.1 Accepted alive Link to Nucleotide Sequence:NM_016675.5Link to Protein Sequence:NP_057884.1Re-query CCDS DB by Nucleotide ID:NM_016675Re-query CCDS DB by Protein ID:NP_057884Link to BLAST:NP_057884.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057884.1 230 O88552 230 100% 0 0

Chromosomal Locations for CCDS 30437.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 139808708 139809400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (693 nt):
ATGGCCTCCCTTGGCGTCCAACTGGTGGGCTACATCCTAGGCCTTTTGGGGCTGTTAGGCACATCCATTG
CCATGCTGCTTCCCAACTGGCGAACGAGTTCCTATGTTGGTGCCAGCATTGTGACGGCGGTTGGCTTTTC
CAAGGGCCTCTGGATGGAGTGTGCGACACACAGCACAGGCATCACCCAGTGCGATATCTACAGTACCCTT
TTAGGACTTCCTGCTGACATCCAGGCTGCCCAGGCCATGATGGTGACGTCCAGTGCAATGTCCTCGCTGG
CTTGTATTATCTCTGTGGTGGGCATGAGATGCACCGTGTTCTGCCAGGATTCTCGAGCTAAGGACAGAGT
GGCTGTAGTGGGTGGAGTCTTTTTCATCCTTGGTGGCATCCTGGGCTTTATCCCAGTTGCTTGGAATCTT
CATGGCATCCTTCGGGACTTCTACTCGCCGCTGGTTCCTGACAGCATGAAATTTGAGATTGGAGAGGCTC
TGTACTTGGGCATCATCTCAGCCCTGTTTTCTTTGGTAGCCGGAGTCATCCTTTGCTTTTCCTGCTCGCC
CCAGGGCAATCGTACCAACTACTATGATGGCTACCAGGCCCAGCCTCTTGCCACTAGGAGCTCTCCAAGA
TCTGCTCAACAGCCCAAAGCCAAGAGTGAGTTCAACTCATACAGCCTGACTGGGTATGTGTGA

Translation (230 aa):
MASLGVQLVGYILGLLGLLGTSIAMLLPNWRTSSYVGASIVTAVGFSKGLWMECATHSTGITQCDIYSTL
LGLPADIQAAQAMMVTSSAMSSLACIISVVGMRCTVFCQDSRAKDRVAVVGGVFFILGGILGFIPVAWNL
HGILRDFYSPLVPDSMKFEIGEALYLGIISALFSLVAGVILCFSCSPQGNRTNYYDGYQAQPLATRSSPR
SAQQPKAKSEFNSYSLTGYV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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