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Report for CCDS23644.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23644.1 Public Mus musculus 9 Snrk 23 108 98 CCDS HistoryNCBI Gene:20623Re-query CCDS DB by CCDS ID:23644.1Re-query CCDS DB by GeneID:20623See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23644.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000120173.8 ENSMUSP00000112919.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120173.8Link to Ensembl Protein Viewer:ENSMUSP00000112919.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120173Re-query CCDS DB by Protein ID:ENSMUSP00000112919
Original member Current member EBI ENSMUST00000118886.8 ENSMUSP00000114132.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118886.8Link to Ensembl Protein Viewer:ENSMUSP00000114132.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118886Re-query CCDS DB by Protein ID:ENSMUSP00000114132
Original member Current member NCBI NM_001164572.1 NP_001158044.1 Accepted alive Link to Nucleotide Sequence:NM_001164572.1Link to Protein Sequence:NP_001158044.1Re-query CCDS DB by Nucleotide ID:NM_001164572Re-query CCDS DB by Protein ID:NP_001158044Link to BLAST:NP_001158044.1
Original member Current member NCBI NM_001357774.1 NP_001344703.1 Accepted alive Link to Nucleotide Sequence:NM_001357774.1Link to Protein Sequence:NP_001344703.1Re-query CCDS DB by Nucleotide ID:NM_001357774Re-query CCDS DB by Protein ID:NP_001344703Link to BLAST:NP_001344703.1
Original member Current member NCBI NM_001357775.1 NP_001344704.1 Accepted alive Link to Nucleotide Sequence:NM_001357775.1Link to Protein Sequence:NP_001344704.1Re-query CCDS DB by Nucleotide ID:NM_001357775Re-query CCDS DB by Protein ID:NP_001344704Link to BLAST:NP_001344704.1
Original member Current member NCBI NM_001357776.1 NP_001344705.1 Accepted alive Link to Nucleotide Sequence:NM_001357776.1Link to Protein Sequence:NP_001344705.1Re-query CCDS DB by Nucleotide ID:NM_001357776Re-query CCDS DB by Protein ID:NP_001344705Link to BLAST:NP_001344705.1
Original member Current member NCBI NM_133741.2 NP_598502.2 Accepted alive Link to Nucleotide Sequence:NM_133741.2Link to Protein Sequence:NP_598502.2Re-query CCDS DB by Nucleotide ID:NM_133741Re-query CCDS DB by Protein ID:NP_598502Link to BLAST:NP_598502.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158044.1 748 Q8VDU5 748 100% 0 0
NP_001344703.1 748 Q8VDU5 748 100% 0 0
NP_001344704.1 748 Q8VDU5 748 100% 0 0
NP_001344705.1 748 Q8VDU5 748 100% 0 0
NP_598502.2 748 Q8VDU5 748 100% 0 0

Chromosomal Locations for CCDS 23644.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 122137013 122137601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122157156 122157297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122160323 122160535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122163917 122164051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122166236 122167403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2247 nt):
ATGGCAGGGTTCAAGCGAGGATATGATGGGAAAATTGCTGGATTATATGATCTGGATAAAACCTTGGGTC
GAGGTCATTTTGCAGTGGTCAAACTTGCCAGGCATGTCTTCACAGGTGAGAAGGTGGCAGTGAAAGTCAT
TGACAAGACGAAGCTGGACACTCTAGCCACTGGTCATCTCTTCCAGGAAGTGAGGTGCATGAAACTAGTG
CAGCACCCCAACATTGTGCGTCTCTATGAAGTCATAGACACCCAGACCAAACTTTATCTCATTCTAGAAC
TTGGAGATGGAGGAGATATGTTTGATTATATAATGAAGCACGAGGAGGGTCTTAATGAAGACTTGGCCAA
GAAGTACTTTGCTCAGATAGTTCATGCTATATCTTATTGCCATAAACTCCATGTGGTCCACAGAGACTTG
AAACCAGAGAATGTAGTCTTTTTTGAAAAACAAGGTCTTGTGAAGTTGACAGACTTTGGCTTCAGCAACA
AATTTCAGCCTGGAAAGAAACTCACCACGAGCTGCGGGTCTCTTGCATACTCTGCTCCAGAAATCCTGCT
TGGCGATGAGTACGATGCCCCTGCAGTAGACATATGGAGCCTGGGCGTGATCCTTTTCATGCTGGTGTGT
GGGCAGCCACCCTTCCAAGAAGCCAACGACAGCGAGACACTGACCATGATCATGGACTGCAAGTACACGG
TGCCACCCCGCGTGTCTGCAGGGTGCAGGGACCTGATCACACGAATGCTACAGAGAGACCCCAAAAGGAG
AGCCTCTCTGGAAGAGATTGAAAGCCACCCTTGGCTCCAGGGAGTGGACCCATCACCAGCCACCAAGTAT
AACATTCCCCTCGTGTCCTACAAGAACCTCTCCGAGGAAGAGCACAACAGCATCATCCAGCGCATGGTGC
TCGGGGACATCGCGGACCGAGACGCCATCGTAGAAGCCCTGGAAACCAACAGGTACAACCACATTACCGC
CACTTACTTTTTACTTGCTGAAAGGATCCTGAGAGAAAAGCAAGAGAAAGAAATACAGACCAGGTCTGCT
AGCCCCAGCAACATCAAGGCCCAGTTTAGGCAGTCATGGCCAACCAAAATTGATGTACCCCAAGACCTTG
AAGATGATCTCACTGCCACCCCTCTGTCACATGCCACAGTCCCGCAGTCTCCTGCTAGGGCTGGTGACAA
TGTCCTCAATGGCCACAGGAGCAAAGGCCTGTGTGACCCAGCCAAGAAAGATGAGCTCCCGGAGCTGGCT
GGGCCGGCACTGTCCACTGTTCCACCTGCAAGCATGAAGCCCGCAGCCAGTGGGCGCAAGTGTCTCTTCA
GGGTGGAAGAAGATGAGGAGGAGGATGAGGAGGACAAGAAGCCTGTGTCCCTGTCCACGCAGGTGGTGCT
GCGCCGGAAGCCATCGGTCACCAATCGCCTGACGTCTCGCAAGAGTGCCCCAGTGCTCAACCAGATCTTC
GAGGAGGGCGAGTCAGACGACGAGTTTGACATGGACGAGAACCTGCCGCCCAAGCTGAGCCGGCTGAAGA
TGAACATTGCCTCACCAGGCACAGTGCACAAGCGCTACCACCGCAGGAAAAGCCAGGGCCGGGGCTCTAG
CTGCAGCAGCTCTGAGACCAGCGATGACGACTCCGAGAGCCGGCGGAGGCTGGACAAGGACAGCGGCTTT
GCTTACTCGTGGCACCGGCGTGACAGCAGTGAGGGGCCACCAGGCAGCGAGGGCGATGGTGGCGGCCAGA
GCAAGCCTAGCAGCGGTGGCGGTGTGGACAAGGCCAGCCCGGGTGAGCAGGGCACGGGTGGTGGCAGCCA
GGGAGGCTCTGGTGGGACCCCGTCGGGTACAGCAGGGTCCTCAAGGCGCTGTGCAGGCCCTGACTCATCC
TCACCCTCCCCCGCCTCAGCCTCTGCCGCTCCACGTGGTGCAGAGCTTGTGCAGAGCCTCAAACTCGTGA
GCCTGTGCCTAGGCTCACAGCTGCATGGCGCCAAGTACATTCTGGACCCGCAGAAGGCCTTGTTCTCCAG
CGTGAAGGTGCAGGAGAAGTCCACGTGGAAGATGTGCATCAGCGCCCCAGGCCCCAGCCCCTCTGCTGAC
CTTGACCCGGTGAGGACCAAGAAGCTGAGGAACAACGCGCTCCAGCTACCTCTGTGCGAAAAGACCATCT
CCGTGAACATCCAGCGCAGCCGCAAGGAAGGGCTGCTCTGCGCCTCCAGCCCCGCCAGCTGCTGCCATGT
CATCTGA

Translation (748 aa):
MAGFKRGYDGKIAGLYDLDKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLATGHLFQEVRCMKLV
QHPNIVRLYEVIDTQTKLYLILELGDGGDMFDYIMKHEEGLNEDLAKKYFAQIVHAISYCHKLHVVHRDL
KPENVVFFEKQGLVKLTDFGFSNKFQPGKKLTTSCGSLAYSAPEILLGDEYDAPAVDIWSLGVILFMLVC
GQPPFQEANDSETLTMIMDCKYTVPPRVSAGCRDLITRMLQRDPKRRASLEEIESHPWLQGVDPSPATKY
NIPLVSYKNLSEEEHNSIIQRMVLGDIADRDAIVEALETNRYNHITATYFLLAERILREKQEKEIQTRSA
SPSNIKAQFRQSWPTKIDVPQDLEDDLTATPLSHATVPQSPARAGDNVLNGHRSKGLCDPAKKDELPELA
GPALSTVPPASMKPAASGRKCLFRVEEDEEEDEEDKKPVSLSTQVVLRRKPSVTNRLTSRKSAPVLNQIF
EEGESDDEFDMDENLPPKLSRLKMNIASPGTVHKRYHRRKSQGRGSSCSSSETSDDDSESRRRLDKDSGF
AYSWHRRDSSEGPPGSEGDGGGQSKPSSGGGVDKASPGEQGTGGGSQGGSGGTPSGTAGSSRRCAGPDSS
SPSPASASAAPRGAELVQSLKLVSLCLGSQLHGAKYILDPQKALFSSVKVQEKSTWKMCISAPGPSPSAD
LDPVRTKKLRNNALQLPLCEKTISVNIQRSRKEGLLCASSPASCCHVI


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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