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Report for CCDS35554.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35554.1 Public Mus musculus 1 Col3a1 23 108 98 CCDS HistoryNCBI Gene:12825Re-query CCDS DB by CCDS ID:35554.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35554.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087883.12 ENSMUSP00000085192.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087883.12Link to Ensembl Protein Viewer:ENSMUSP00000085192.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000087883Re-query CCDS DB by Protein ID:ENSMUSP00000085192
Original member Current member NCBI NM_009930.2 NP_034060.2 Accepted alive Link to Nucleotide Sequence:NM_009930.2Link to Protein Sequence:NP_034060.2Re-query CCDS DB by Nucleotide ID:NM_009930Re-query CCDS DB by Protein ID:NP_034060Link to BLAST:NP_034060.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034060.2 1464 P08121 1464 100% 0 0

Chromosomal Locations for CCDS 35554.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 45311748 45311832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45321497 45321696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45321942 45321992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45322406 45322519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45323723 45323797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45325360 45325413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45325805 45325858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45326571 45326624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45327589 45327642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45327810 45327863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45328433 45328486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45328877 45328921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45329053 45329106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45330103 45330147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45330555 45330608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45331106 45331204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45331517 45331561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45331678 45331776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45331973 45332026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45332135 45332242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45332965 45333018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45333563 45333661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45334007 45334060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45334214 45334312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45334597 45334650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45334761 45334814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45335135 45335188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45335728 45335781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45336660 45336704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45337241 45337339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45337426 45337533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45337958 45338011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45338574 45338627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45338710 45338763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45339359 45339412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45339874 45339981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45340255 45340308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45340630 45340683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45340866 45341027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45341138 45341245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45342123 45342230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45343256 45343309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45343394 45343501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45343966 45344019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45344459 45344566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45344797 45344850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45344952 45345059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45345848 45346142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45347120 45347307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45347636 45347878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45348601 45348747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4395 nt):
ATGATGAGCTTTGTGCAAAGTGGAACCTGGTTTCTTCTCACCCTTCTTCATCCCACTCTTATTTTGGCAC
AGCAGTCCAACGTAGATGAATTGGGATGCAGCCACCTTGGTCAGTCCTATGAGTCTAGAGATGTCTGGAA
GCCAGAACCATGTCAAATATGTGTCTGTGACTCAGGATCTGTCCTTTGCGATGACATAATCTGTGATGAG
GAGCCACTAGACTGCCCCAACCCAGAGATCCCATTTGGAGAATGTTGTGCAATATGCCCACAGCCTTCTA
CACCTGCTCCTGTGCTTCCTGATGGCCATGGACCTCAAGGCCCCAAGGGAGATCCGGGTCCTCCTGGCAT
TCCTGGGAGAAATGGTGACCCTGGCCTTCCAGGACAACCAGGTCTCCCTGGGCCTCCTGGCTCCCCTGGA
ATCTGTGAATCATGTCCAACTGGTGGCCAAAATTATTCTCCCCAATTCGACTCATATGATGTCAAGTCTG
GAGTGGGAGGAATGGGTGGCTATCCGGGACCAGCTGGTCCACCAGGCCCTCCAGGACCCCCTGGTTCTTC
TGGACATCCTGGATCTCCTGGTTCTCCTGGATACCAAGGTCCCCCTGGTGAACCTGGTCAAGCTGGTCCG
GCAGGCCCTCCAGGACCTCCTGGTGCTCTTGGTCCAGCTGGTCCTGCTGGAAAGGATGGAGAGTCAGGAA
GACCTGGACGACCTGGAGAGCGTGGACTGCCTGGACCTCCAGGTATCAAAGGCCCAGCTGGCATGCCTGG
ATTCCCTGGTATGAAAGGACACAGAGGCTTTGATGGACGCAATGGAGAAAAGGGAGAAACAGGTGCTCCT
GGACTGAAGGGTGAAAATGGTCTTCCAGGAGACAACGGAGCTCCTGGCCCCATGGGTCCTAGAGGGGCTC
CTGGTGAGCGAGGACGACCAGGCCTTCCTGGAGCTGCAGGTGCTCGAGGCAATGATGGTGCTCGGGGCAG
TGATGGGCAACCTGGTCCCCCTGGCCCTCCTGGAACTGCAGGATTCCCTGGATCCCCTGGTGCTAAGGGT
GAAGTTGGACCTGCAGGGTCCCCTGGCTCAAATGGCTCACCAGGACAAAGAGGGGAGCCTGGACCGCAGG
GACATGCTGGTGCTCAAGGGCCTCCTGGCCCTCCCGGGAATAACGGCAGTCCTGGTGGAAAGGGTGAAAT
GGGTCCAGCTGGCATTCCTGGAGCCCCTGGACTAATAGGAGCAAGGGGCCCCCCTGGACCAGCAGGAACT
AATGGTATACCCGGAACACGAGGTCCTTCAGGTGAACCCGGCAAGAACGGTGCGAAGGGAGAGCCAGGAG
CACGCGGTGAACGGGGCGAAGCTGGTTCCCCAGGAATTCCAGGACCTAAGGGCGAAGATGGCAAAGATGG
ATCACCTGGAGAACCTGGTGCAAATGGGCTTCCAGGAGCCGCAGGAGAAAGGGGTCCTAGTGGCTTCCGA
GGACCTGCAGGGCCAAATGGCATCCCAGGAGAAAAGGGTCCTCCCGGAGAGCGTGGTGGCCCAGGTCCTG
CAGGACCCAGAGGAGTAGCTGGAGAACCTGGCCGAGATGGAACCCCTGGAGGTCCAGGGATACGGGGTAT
GCCCGGAAGTCCAGGTGGACCAGGCAATGATGGAAAACCAGGACCTCCTGGAAGTCAAGGAGAAAGTGGT
CGCCCTGGTCCCCCTGGCCCATCTGGTCCCAGAGGTCAGCCTGGTGTCATGGGTTTCCCTGGTCCTAAAG
GAAATGATGGTGCCCCTGGCAAGAATGGAGAACGGGGTGGCCCTGGAGGACCTGGCCTTCCAGGTCCTGC
TGGAAAGAATGGGGAGACTGGACCTCAGGGTCCCCCAGGACCTACTGGCCCAGCTGGTGACAAGGGAGAT
TCTGGACCCCCTGGTCCACAAGGATTACAAGGCATACCTGGTACCGGTGGTCCTCCAGGAGAAAATGGGA
AACCAGGTGAACCAGGTCCAAAGGGTGAAGTCGGTGCTCCTGGAGCTCCTGGAGGCAAGGGTGATTCTGG
TGCACCTGGAGAACGTGGGCCTCCTGGAACAGCAGGAATCCCTGGTGCTAGAGGTGGAGCTGGACCCCCT
GGCCCTGAGGGAGGAAAGGGCCCTGCTGGTCCCCCTGGCCCTCCTGGTGCTTCTGGTTCTCCTGGTCTGC
AAGGGATGCCAGGGGAAAGAGGAGGTCCTGGAAGTCCTGGCCCAAAGGGTGAAAAGGGTGAACCAGGTGG
TGCAGGTGCTGACGGAGTTCCAGGAAAGGATGGGCCAAGGGGTCCTGCTGGCCCTATTGGTCCCCCTGGC
CCAGCTGGTCAGCCTGGAGATAAGGGTGAAGGTGGTTCCCCTGGACTTCCAGGTATAGCTGGACCTCGAG
GTGGCCCTGGTGAGAGAGGTGAACATGGCCCTCCAGGACCTGCTGGCTTCCCGGGTGCTCCTGGACAGAA
TGGTGAACCAGGTGCTAAAGGAGAAAGAGGTGCCCCTGGAGAGAAAGGTGAAGGAGGCCCTCCAGGACCT
GCAGGACCCACTGGCAGTTCTGGACCTGCTGGTCCGCCTGGTCCTCAGGGTGTAAAGGGTGAACGTGGTA
GTCCTGGTGGTCCTGGTACTGCTGGCTTTCCCGGTGGGCGTGGTCTTCCTGGTCCTCCTGGCAATAATGG
TAATCCAGGGCCCCCAGGACCCAGTGGTGCTCCTGGCAAGGACGGCCCTCCAGGTCCTGCAGGCAACAGT
GGTTCTCCTGGCAACCCTGGAATAGCTGGACCAAAAGGTGATGCTGGACAGCCTGGAGAGAAGGGGCCAC
CTGGTGCTCAGGGTCCTCCGGGTTCCCCAGGCCCACTTGGAATTGCAGGGCTAACTGGAGCACGAGGTCT
TGCTGGACCACCAGGCATGCCAGGTCCACGGGGTAGCCCTGGACCTCAGGGTATCAAGGGTGAAAGTGGA
AAACCAGGAGCCAGTGGCCATAATGGGGAACGTGGTCCTCCTGGACCCCAAGGTCTTCCTGGTCAGCCTG
GTACAGCTGGTGAACCTGGAAGGGATGGAAACCCTGGATCAGATGGTCAGCCAGGTCGAGATGGATCTCC
TGGTGGCAAGGGTGATCGTGGTGAAAATGGTTCTCCTGGTGCCCCAGGCGCTCCTGGTCATCCAGGCCCA
CCTGGCCCTGTTGGTCCATCTGGAAAGAGTGGTGACAGAGGAGAAACTGGCCCTGCTGGTCCTTCTGGTG
CTCCAGGCCCTGCTGGAGCTCGAGGTGCTCCGGGTCCCCAAGGTCCACGAGGTGACAAAGGTGAAACTGG
TGAACGTGGCTCTAATGGCATCAAAGGACATCGAGGATTCCCTGGCAATCCAGGTCCTCCAGGTTCTCCT
GGTGCTGCTGGTCACCAGGGTGCAATTGGTAGTCCAGGACCTGCAGGTCCCAGAGGACCAGTTGGACCAC
ATGGACCTCCTGGAAAAGATGGAACAAGTGGGCATCCAGGTCCTATTGGACCACCAGGTCCTAGAGGAAA
CAGAGGTGAAAGAGGATCTGAGGGCTCGCCAGGCCACCCTGGACAGCCAGGACCCCCTGGACCCCCTGGT
GCCCCTGGTCCCTGCTGTGGTGGTGGTGCTGCTGCCATTGCTGGAGTTGGAGGTGAAAAGTCTGGTGGCT
TTTCACCCTATTATGGAGACGATCCAATGGATTTCAAGATCAACACTGAAGAGATTATGTCTTCACTCAA
GTCTGTTAATGGACAAATAGAGAGTCTTATAAGCCCTGATGGTTCTCGAAAAAACCCTGCTCGGAACTGC
AGAGACCTAAAATTCTGCCACCCCGAACTCAAGAGTGGAGAATACTGGGTTGATCCTAACCAAGGCTGCA
AGATGGATGCTATAAAAGTATTCTGTAACATGGAAACTGGGGAAACATGCATAAATGCCAGCCCCATGAC
TGTCCCACGTAAGCACTGGTGGACAGATTCTGGTGCAGAGAAGAAACATGTTTGGTTTGGAGAATCTATG
AATGGTGGTTTTCAGTTCAGCTATGGCCCTCCTGATCTTCCTGAAGATGTCGTTGATGTGCAGCTGGCAT
TCCTCAGACTTCTTTCCAGCCGGGCCTCCCAGAACATTACATACCACTGCAAAAACAGTATTGCCTATAT
GGATCAGGCCAGTGGCAATGTAAAGAAGTCTCTGAAGCTGATGGGATCAAATGAAGGCGAATTCAAGGCT
GAAGGAAACAGCAAATTCACTTACACAGTTCTAGAGGATGGCTGTACTAAACACACTGGGGAATGGAGCA
AGACAGTCTTTGAATATCAAACACGCAAGGCAATGAGACTACCCATCATAGATATCGCACCCTATGACAT
TGGGGGTCCTGATCAAGAATTTGGTGTGGACATTGGCCCTGTTTGCTTTTTATAA

Translation (1464 aa):
MMSFVQSGTWFLLTLLHPTLILAQQSNVDELGCSHLGQSYESRDVWKPEPCQICVCDSGSVLCDDIICDE
EPLDCPNPEIPFGECCAICPQPSTPAPVLPDGHGPQGPKGDPGPPGIPGRNGDPGLPGQPGLPGPPGSPG
ICESCPTGGQNYSPQFDSYDVKSGVGGMGGYPGPAGPPGPPGPPGSSGHPGSPGSPGYQGPPGEPGQAGP
AGPPGPPGALGPAGPAGKDGESGRPGRPGERGLPGPPGIKGPAGMPGFPGMKGHRGFDGRNGEKGETGAP
GLKGENGLPGDNGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKG
EVGPAGSPGSNGSPGQRGEPGPQGHAGAQGPPGPPGNNGSPGGKGEMGPAGIPGAPGLIGARGPPGPAGT
NGIPGTRGPSGEPGKNGAKGEPGARGERGEAGSPGIPGPKGEDGKDGSPGEPGANGLPGAAGERGPSGFR
GPAGPNGIPGEKGPPGERGGPGPAGPRGVAGEPGRDGTPGGPGIRGMPGSPGGPGNDGKPGPPGSQGESG
RPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGLPGPAGKNGETGPQGPPGPTGPAGDKGD
SGPPGPQGLQGIPGTGGPPGENGKPGEPGPKGEVGAPGAPGGKGDSGAPGERGPPGTAGIPGARGGAGPP
GPEGGKGPAGPPGPPGASGSPGLQGMPGERGGPGSPGPKGEKGEPGGAGADGVPGKDGPRGPAGPIGPPG
PAGQPGDKGEGGSPGLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQNGEPGAKGERGAPGEKGEGGPPGP
AGPTGSSGPAGPPGPQGVKGERGSPGGPGTAGFPGGRGLPGPPGNNGNPGPPGPSGAPGKDGPPGPAGNS
GSPGNPGIAGPKGDAGQPGEKGPPGAQGPPGSPGPLGIAGLTGARGLAGPPGMPGPRGSPGPQGIKGESG
KPGASGHNGERGPPGPQGLPGQPGTAGEPGRDGNPGSDGQPGRDGSPGGKGDRGENGSPGAPGAPGHPGP
PGPVGPSGKSGDRGETGPAGPSGAPGPAGARGAPGPQGPRGDKGETGERGSNGIKGHRGFPGNPGPPGSP
GAAGHQGAIGSPGPAGPRGPVGPHGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPG
APGPCCGGGAAAIAGVGGEKSGGFSPYYGDDPMDFKINTEEIMSSLKSVNGQIESLISPDGSRKNPARNC
RDLKFCHPELKSGEYWVDPNQGCKMDAIKVFCNMETGETCINASPMTVPRKHWWTDSGAEKKHVWFGESM
NGGFQFSYGPPDLPEDVVDVQLAFLRLLSSRASQNITYHCKNSIAYMDQASGNVKKSLKLMGSNEGEFKA
EGNSKFTYTVLEDGCTKHTGEWSKTVFEYQTRKAMRLPIIDIAPYDIGGPDQEFGVDIGPVCFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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