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Report for CCDS13465.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13465.1 Public Homo sapiens 20 CIMIP1 24 110 108 CCDS HistoryNCBI Gene:128602Re-query CCDS DB by CCDS ID:13465.1See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13465.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371168.4 ENSP00000360210.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371168.4Link to Ensembl Protein Viewer:ENSP00000360210.3Re-query CCDS DB by Nucleotide ID:ENST00000371168Re-query CCDS DB by Protein ID:ENSP00000360210
Original member Current member NCBI NM_178456.3 NP_848551.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178456.3Link to Protein Sequence:NP_848551.1Re-query CCDS DB by Nucleotide ID:NM_178456Re-query CCDS DB by Protein ID:NP_848551Link to BLAST:NP_848551.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848551.1 137 Q9H1P6 137 100% 0 0

Chromosomal Locations for CCDS 13465.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 58150965 58151032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58153544 58153625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58155468 58155569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58160661 58160822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (414 nt):
ATGGCGCAGAAACCTCTCAGCACCGCGGCGGCTGAACGCATGAACCTTGTGGGTCAGGATGAGATCTGGA
AATACCGTCTGAAGGCTGAATCGGAAGCACGGCAGAACTGGCCCCAGAACTGGGGGTTTTTAACAACCCC
TTTTGAGGAGTTGATCAAGTGTGAAGAAGATCTCCCCACCCCAAAGCCCAAAATCGAGCTTCCTGAGCGT
TTCCGCATCCGGCCGGTGACCCCAGTGGAGAAGTACATCAAGGTCTTTCCATCCCCCCCAGTCCCACAGA
CCACCCAGGGCTTCATCGGCTGGAGATCTGCAGTGCCAGGCCTGAACAAGTGCCTAGAGCTCGACGATGC
GATCAGAAGCTGCAAAGGTGCTTTTGCACGAGAGCTGTGCTGGCCCAAGCAGGGCGTGCACTGA

Translation (137 aa):
MAQKPLSTAAAERMNLVGQDEIWKYRLKAESEARQNWPQNWGFLTTPFEELIKCEEDLPTPKPKIELPER
FRIRPVTPVEKYIKVFPSPPVPQTTQGFIGWRSAVPGLNKCLELDDAIRSCKGAFARELCWPKQGVH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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