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Report for CCDS17262.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17262.1 Public Mus musculus 3 Cpa3 23 108 98 CCDS HistoryNCBI Gene:12873Re-query CCDS DB by CCDS ID:17262.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17262.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001921.2 ENSMUSP00000001921.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001921.2Link to Ensembl Protein Viewer:ENSMUSP00000001921.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000001921Re-query CCDS DB by Protein ID:ENSMUSP00000001921
Original member Current member NCBI NM_007753.2 NP_031779.1 Accepted alive Link to Nucleotide Sequence:NM_007753.2Link to Protein Sequence:NP_031779.1Re-query CCDS DB by Nucleotide ID:NM_007753Re-query CCDS DB by Protein ID:NP_031779Link to BLAST:NP_031779.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031779.1 417 P15089 417 100% 0 0

Chromosomal Locations for CCDS 17262.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 20215805 20215992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20219755 20219839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20222087 20222289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20223232 20223322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20225087 20225197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20227165 20227266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20228808 20228909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20229014 20229116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20239554 20239678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20241915 20241990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20242104 20242171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1254 nt):
ATGAGGTTCTTCTTGCTTATGGCTGTCATCTACACTACACTTGCAATTGCTCCTGTCCACTTTGACAGGG
AGAAGGTATTCCGTGTGAAACTCCAGAATGAAAAGCACGCCAGTGTCTTGAAGAACTTGACCCAAAGCAT
TGAGCTCGACTTCTGGTATCCAGATGCTATCCATGATATTGCTGTGAATATGACTGTGGATTTCCGAGTT
AGTGAGAAGGAATCTCAGACCATCCAGTCAACCTTGGAACAACATAAAATCCATTATGAAATTCTGATAC
ATGACCTACAAGAAGAGATAGAGAAACAGTTTGATGTGAAAGATGAAATCGCAGGCAGGCACAGTTATGC
AAAATACAATGACTGGGACAAGATTGTTTCTTGGACTGAAAAAATGTTAGAAAAACATCCTGAGATGGTT
TCAAGGATTAAAATTGGATCAACTGTTGAAGATAATCCATTATATGTCCTCAAGATTGGGAAAAAAGATG
GAGAAAGAAAGGCTATCTTTATGGACTGTGGCATTCATGCACGTGAATGGATTTCTCCAGCTTTCTGTCA
GTGGTTTGTCTATCAGGCAACCAAGAGTTATGGAAAAAATAAAATCATGACCAAACTCTTGGACCGGATG
AATTTTTACGTTCTGCCTGTATTCAATGTAGACGGATACATTTGGTCATGGACACAGGATCGAATGTGGA
GAAAAAACCGTTCCAGGAACCAAAACTCCACCTGCATTGGCACTGACCTCAACAGGAACTTTGATGTCTC
GTGGGACTCTTCTCCAAACACCAACAAACCATGCCTCAATGTCTACAGGGGACCTGCACCAGAGTCTGAG
AAAGAGACAAAAGCTGTCACCAACTTCATTCGAAGCCATCTGAACTCAATCAAGGCTTATATCACTTTCC
ATTCCTACTCGCAGATGCTATTAATTCCTTATGGCTACACATTCAAACTGCCTCCTAACCACCAGGACCT
ATTGAAAGTTGCAAGGATTGCCACGGATGCTCTCTCAACTAGATATGAAACCCGTTACATCTACGGCCCA
ATAGCATCCACAATTTACAAGACTTCAGGCTCTTCCTTAGACTGGGTTTATGACCTGGGCATCAAACACA
CATTTGCCTTTGAGCTTCGTGATAAAGGAAAGTCTGGGTTTCTTCTTCCAGAATCCCGGATAAAGCCAAC
ATGTAAAGAAACCATGCTTTCTGTCAAATTTATTGCCAAGTATATCCTCAAGAATACTTCCTAA

Translation (417 aa):
MRFFLLMAVIYTTLAIAPVHFDREKVFRVKLQNEKHASVLKNLTQSIELDFWYPDAIHDIAVNMTVDFRV
SEKESQTIQSTLEQHKIHYEILIHDLQEEIEKQFDVKDEIAGRHSYAKYNDWDKIVSWTEKMLEKHPEMV
SRIKIGSTVEDNPLYVLKIGKKDGERKAIFMDCGIHAREWISPAFCQWFVYQATKSYGKNKIMTKLLDRM
NFYVLPVFNVDGYIWSWTQDRMWRKNRSRNQNSTCIGTDLNRNFDVSWDSSPNTNKPCLNVYRGPAPESE
KETKAVTNFIRSHLNSIKAYITFHSYSQMLLIPYGYTFKLPPNHQDLLKVARIATDALSTRYETRYIYGP
IASTIYKTSGSSLDWVYDLGIKHTFAFELRDKGKSGFLLPESRIKPTCKETMLSVKFIAKYILKNTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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