NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16850.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16850.1 Public Mus musculus 2 Cst9 23 108 98 CCDS HistoryNCBI Gene:13013Re-query CCDS DB by CCDS ID:16850.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16850.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028935.3 ENSMUSP00000028935.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028935.3Link to Ensembl Protein Viewer:ENSMUSP00000028935.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000028935Re-query CCDS DB by Protein ID:ENSMUSP00000028935
Original member Current member NCBI NM_009979.1 NP_034109.1 Accepted alive Link to Nucleotide Sequence:NM_009979.1Link to Protein Sequence:NP_034109.1Re-query CCDS DB by Nucleotide ID:NM_009979Re-query CCDS DB by Protein ID:NP_034109Link to BLAST:NP_034109.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034109.1 137 Q9Z0H6 137 100% 0 0

Chromosomal Locations for CCDS 16850.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 148835211 148835432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 148836674 148836787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 148838452 148838529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (414 nt):
ATGTCCTGTCCACTGAGAAAGAAAGCTCTGCCTCTCACCATGCTGCTGCTTCTGCTGAGTTTTCATGTTC
TCATCACTCCTGTCTCGAAGGCCAATAAAGAAACAAACAGATCTGTTCATTTCATTCCCACAGTGGAATT
TGCCGTGAACACATTCAACCAGGAAAGTCAGGATGAATATGCCTACAGGATGGAACATATCATGAGTTCC
TGGAGGGAGAAGGTAAATTTTCCAACCGTGTATTCCATGAGGCTTCAGCTGCGTAGAACCATATGCAAGA
AATTTGAGGAGAGTCTCGATATTTGCCCCTTTCAGGAGAGCCATGGTCTGAATAATACCTTCACCTGCCT
GTTTACTGTCGGTACCTATCCCTGGATAACAAAATTCAAGCTCTTCAGGAGTGTGTGCTCATAG

Translation (137 aa):
MSCPLRKKALPLTMLLLLLSFHVLITPVSKANKETNRSVHFIPTVEFAVNTFNQESQDEYAYRMEHIMSS
WREKVNFPTVYSMRLQLRRTICKKFEESLDICPFQESHGLNNTFTCLFTVGTYPWITKFKLFRSVCS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH