NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19483.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19483.1 Public Mus musculus 5 Sparcl1 23 108 98 CCDS HistoryNCBI Gene:13602Re-query CCDS DB by CCDS ID:19483.1Re-query CCDS DB by GeneID:13602See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19483.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031249.7 ENSMUSP00000031249.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031249.7Link to Ensembl Protein Viewer:ENSMUSP00000031249.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000031249Re-query CCDS DB by Protein ID:ENSMUSP00000031249
Original member Current member NCBI NM_001359014.1 NP_001345943.1 Accepted alive Link to Nucleotide Sequence:NM_001359014.1Link to Protein Sequence:NP_001345943.1Re-query CCDS DB by Nucleotide ID:NM_001359014Re-query CCDS DB by Protein ID:NP_001345943Link to BLAST:NP_001345943.1
Original member Current member NCBI NM_001359016.1 NP_001345945.1 Accepted alive Link to Nucleotide Sequence:NM_001359016.1Link to Protein Sequence:NP_001345945.1Re-query CCDS DB by Nucleotide ID:NM_001359016Re-query CCDS DB by Protein ID:NP_001345945Link to BLAST:NP_001345945.1
Original member Current member NCBI NM_010097.4 NP_034227.3 Accepted alive Link to Nucleotide Sequence:NM_010097.4Link to Protein Sequence:NP_034227.3Re-query CCDS DB by Nucleotide ID:NM_010097Re-query CCDS DB by Protein ID:NP_034227Link to BLAST:NP_034227.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345943.1 650 P70663 650 100% 0 0
NP_001345945.1 650 P70663 650 100% 0 0
NP_034227.3 650 P70663 650 100% 0 0

Chromosomal Locations for CCDS 19483.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 104079549 104079577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104085010 104085158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104085707 104085855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104087022 104087158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104088397 104088517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104089600 104089718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104090392 104090461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104092378 104093373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104094639 104094767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104097709 104097762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1953 nt):
ATGAAGGCTGTGCTTCTCCTCCTGTGCGCCTTGGGAACCGCTGTGGCAATCCCGACAAGTACAAGGTTTC
TCTCTGACCACTCCAACCCAACTACTGCAACACTGGTGACACCGGAAGACGCTACAGTCCCCATTGCCGG
GGTTGAAGCTACAGCAGACATAGAAAACCATCCCAGTGACAAGGCTGAAAAACCTTCAGCACTTAATTCA
GAAGAGGAAACTCATGAACAGTCAACAGAGCAGGACAAAACCTACAGCTTCGAGGTGGACCTGAAGGATG
AGGAGGATGGAGATGGGGATTTAAGTGTAGATCCAACGGAAGGAACACTAACACTGGATCTACAAGAAGG
TACAAGTGAGCCTCAACAGAAAAGTCTCCCGGAGAACGGCGATTTCCCCGCGACCGTGTCCACTTCCTAT
GTGGATCCTAACCAACGCGCAAACATCACAAAGGGAAAGGAGAGTCAGGAGCAACCTGTAAGTGACTCAC
ACCAGCAACCGAATGAAAGCAGCAAGCAAACCCAAGACTTAAAGGCTGAAGAAAGCCAGACACAAGATCC
AGACATTCCCAATGAAGAAGAGGAAGAAGAAGAGGACGAAGAAGAGGAAGAAGAGGAAGAGCCGGAAGAC
ATTGGTGCCCCCAGTGATAACCAAGAGGAGGGAAAAGAACCTCTGGAGGAGCAGCCTACCAGCAAGTGGG
AAGGAAACAGAGAGCAATCTGATGACACCTTAGAAGAGTCCAGTCAGCCCACTCAGATAAGCAAGACAGA
GAAGCATCAATCTGAGCAAGGAAACCAAGGGCAGGAGAGTGACTCTGAGGCAGAAGGAGAGGACAAGGCT
GCAGGCAGCAAGGAACACATTCCACATACAGAGCAGCAGGACCAAGAAGGGAAAGCTGGCCTTGAAGCTA
TTGGCAACCAGAAGGACACTGATGAGAAGGCCGTTTCCACAGAACCTACCGATGCTGCCGTGGTGCCTAG
GAGTCACGGAGGAGCTGGTGATAACGGGGGCGGGGATGACTCTAAGCATGGTGCAGGCGATGACTACTTC
ATCCCCAGCCAGGAATTCCTAGAGGCCGAAAGGATGCATTCCCTCTCCTATTACCTCAAATATGGCGGCG
GCGAGGAGACAACGACTGGCGAGAGTGAGAACCGGAGGGAGGCTGCAGACAACCAAGAGGCCAAGAAAGC
TGAGAGCTCACCAAATGCTGAACCTTCAGATGAGGGCAACTCAAGGGAGCACAGTGCTGGTTCTTGCACG
AACTTCCAATGTAAAAGGGGACACATTTGCAAAACCGATCCACAAGGGAAACCTCACTGTGTTTGCCAAG
ATCCAGAGACTTGTCCCCCTGCAAAAATCCTAGATCAGGCTTGTGGCACTGACAACCAAACCTACGCCAG
CTCCTGTCACCTGTTTGCTACCAAGTGCAGGCTGGAGGGGACCAAAAAGGGACACCAACTGCAGCTGGAT
TACTTCGGAGCTTGCAAATCTATTCCTGCTTGTACGGACTTTGAAGTGGCTCAGTTTCCCCTGCGGATGA
GAGACTGGCTCAAAAACATCCTCATGCAGCTTTATGAACCAAATCCCAAACATGGCGGCTATCTCAATGA
AAAGCAAAGAAGCAAAGTCAAAAAAATTTACCTGGATGAGAAGAGACTCTTGGCTGGAGACCATCCCATT
GAACTTCTCTTGAGGGACTTTAAGAAAAACTACCACATGTATGTGTATCCTGTGCACTGGCAGTTTAATG
AACTGGACCAGCATCCTGCAGACAGGATCTTGACACACTCTGAACTTGCTCCTCTGCGAGCTTCCCTGGT
GCCCATGGAACACTGCATAACTCGCTTCTTTGAGGAGTGTGACCCCAACAAGGATAAGCACATCACCTTG
AAGGAATGGGGCCACTGCTTTGGAATTAAAGAGGAGGATATAGATGAAAACCTCCTCTTTTGA

Translation (650 aa):
MKAVLLLLCALGTAVAIPTSTRFLSDHSNPTTATLVTPEDATVPIAGVEATADIENHPSDKAEKPSALNS
EEETHEQSTEQDKTYSFEVDLKDEEDGDGDLSVDPTEGTLTLDLQEGTSEPQQKSLPENGDFPATVSTSY
VDPNQRANITKGKESQEQPVSDSHQQPNESSKQTQDLKAEESQTQDPDIPNEEEEEEEDEEEEEEEEPED
IGAPSDNQEEGKEPLEEQPTSKWEGNREQSDDTLEESSQPTQISKTEKHQSEQGNQGQESDSEAEGEDKA
AGSKEHIPHTEQQDQEGKAGLEAIGNQKDTDEKAVSTEPTDAAVVPRSHGGAGDNGGGDDSKHGAGDDYF
IPSQEFLEAERMHSLSYYLKYGGGEETTTGESENRREAADNQEAKKAESSPNAEPSDEGNSREHSAGSCT
NFQCKRGHICKTDPQGKPHCVCQDPETCPPAKILDQACGTDNQTYASSCHLFATKCRLEGTKKGHQLQLD
YFGACKSIPACTDFEVAQFPLRMRDWLKNILMQLYEPNPKHGGYLNEKQRSKVKKIYLDEKRLLAGDHPI
ELLLRDFKKNYHMYVYPVHWQFNELDQHPADRILTHSELAPLRASLVPMEHCITRFFEECDPNKDKHITL
KEWGHCFGIKEEDIDENLLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH