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Report for CCDS87102.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87102.1 Public Homo sapiens 3 C3orf49 24 110 108 CCDS HistoryNCBI Gene:132200Re-query CCDS DB by CCDS ID:87102.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87102.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295896.13 ENSP00000295896.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000295896.13Link to Ensembl Protein Viewer:ENSP00000295896.8Re-query CCDS DB by Nucleotide ID:ENST00000295896Re-query CCDS DB by Protein ID:ENSP00000295896
Original member Current member NCBI NM_001355236.2 NP_001342165.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001355236.2Link to Protein Sequence:NP_001342165.1Re-query CCDS DB by Nucleotide ID:NM_001355236Re-query CCDS DB by Protein ID:NP_001342165Link to BLAST:NP_001342165.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342165.1 292 Q96BT1 292 100% 0 0

Chromosomal Locations for CCDS 87102.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 63819472 63819596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63823250 63823569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63827601 63827725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63831110 63831223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63831680 63831844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63845023 63845052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (879 nt):
ATGGCCCAACCTCAGCTGTATCTACCAGAACCCTTTAAGATTGCCTACAGAAAAGTTGGACAGTGCCGAA
GATTCCAGCAACTCAAGAAGAAAAATGGCTCATTCAAAAGGAAGGGGATAGAAAGATGGCATAGAGCTGT
GTCTACCAACTTACTAAAACAAAATGTATTGGTCCCTAAAGAGGAATCATCCAGTGATAGTGACATGGGA
TTTCATGAAAGCCAGCAAAATCAGAAAAGTAATTTGAAGACGAAAGTGAAGACTGCTTTTGGGAGGATGC
TGTCCTACAAGTATAGAAGCAAGCCAGCATGTGCCAGCCAAGAGGGCTCCACTGACCATAAAGAAGCCCT
CCTGTCAAACACGCAGAGCCTTCTCCCTAGGATTGTCAAGGAGTTTTCATCTCCCAAGTTATTTACAGCA
AAAATGAGAAAGCTCTCAGAGAATGCGACTATACAACTTGATGTTGTAGAGGCAGAGACAGAGGAGATAA
CCCAGGGAAACACACTCCTTCGGGCCAGGAGAACCACCAAGCGGTTATCTGTGACATCTCTTCCTTCAGG
ACTGCAAAAGGGGCCATATTCACCAAAAAAGAGACCACACTTTCCAGCACTTAAAAAAAAGAAGCGTGGC
ATGGAAAACATCCTTCGAAAATCAGATTTGACAGTAGGAAAGCTTCAAATGCAGGTGGATGACCTCATAG
AAACAGTGACTGATAAATCCATGAAGCTACTGGCCCAAAGACATGCTGAGCTTCAACAGTGTGAGTTTCT
GGGGGATGAAATTCTTCAGTCTTCTAAACAGTTCCAGAGGATATCCAAGAGAACCATGAGGAAGTATAAA
TTAAAAAATATGACCACAAAAGGACCTGGAGACAGCTGA

Translation (292 aa):
MAQPQLYLPEPFKIAYRKVGQCRRFQQLKKKNGSFKRKGIERWHRAVSTNLLKQNVLVPKEESSSDSDMG
FHESQQNQKSNLKTKVKTAFGRMLSYKYRSKPACASQEGSTDHKEALLSNTQSLLPRIVKEFSSPKLFTA
KMRKLSENATIQLDVVEAETEEITQGNTLLRARRTTKRLSVTSLPSGLQKGPYSPKKRPHFPALKKKKRG
MENILRKSDLTVGKLQMQVDDLIETVTDKSMKLLAQRHAELQQCEFLGDEILQSSKQFQRISKRTMRKYK
LKNMTTKGPGDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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