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Report for CCDS90742.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90742.1 Public Mus musculus X 8030474K03Rik 23 108 98 CCDS HistoryNCBI Gene:382231Re-query CCDS DB by CCDS ID:90742.1Re-query CCDS DB by GeneID:382231See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 90742.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163399.7 ENSMUSP00000130455.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163399.7Link to Ensembl Protein Viewer:ENSMUSP00000130455.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000163399Re-query CCDS DB by Protein ID:ENSMUSP00000130455
Original member Current member NCBI NM_001359671.1 NP_001346600.1 Accepted alive Link to Nucleotide Sequence:NM_001359671.1Link to Protein Sequence:NP_001346600.1Re-query CCDS DB by Nucleotide ID:NM_001359671Re-query CCDS DB by Protein ID:NP_001346600Link to BLAST:NP_001346600.1

Chromosomal Locations for CCDS 90742.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 101794754 101796088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101796678 101796837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101797360 101797442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101797716 101797761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101798102 101798118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1641 nt):
ATGAGCTCTTTGGGTAAGGCGGCAGTCCCCACAGCCTGTGATGATGAGGACACCCTTCTTACCGGAGATG
CGAACTCCCAGCATCAGGTGTCTGGTTCTGAAGCTGGCTTGAGCCAGGAGGGCAGGGAGCGGTTAGGGGA
CCCTGTGATCAGCCCAGGAGTTGCAGAGGGTCCGAGCCCCCTCCAAGGGCCTCTGGAGATCAGAGAGGGT
GAGGCCAGCCTCCCGGGCCCCGAGAGCAGTGACTTAGGGTCTGGGTCTAAGATGGAGGCAACAGAGGACA
CAGGCAGCATGCTTAGGGATCCGGAAGGCGGGGCCACTTCTCCCGTAGACCAAGAAGAAGAAGTTGACAT
GGATTTCTTGCCCCAGCTCAGTATTGAGGCCATGACTGTCATGCGAGAGCTGACCAACCTACAGCTCCGA
AAAGTCTGCAGGTACCCGTCCCCACGAACTTGTGCGGCTGAACTGGCTGCCCTCTGGGGAAACGTAGATG
AAGGCTCCAACAGAGGGGCACTGTCTCCGAGCTCTGTGAGAGGGAAACAGGGCCCCGAAGGTGCACTGTA
CCCCAGAGGCCTGGGGCGAGGCAGAGCCTGGGGGACCCCAAGAAGACACACCATAGGTAGGATGGTGAGC
AGTGAAGGTGTCCACTATCCCTCCTCAAACCCTGTGTCTTCTGATGAGTTCAGTGACACTCATGTGATGA
AAGGAACCGCTGGCCTCAAAGAAGACCAGGCCAGGTCCAGTGGCCTCACTGAGCTGGATAACATAGCCAG
ACACACAAATGTCCGTGGCAGAGGAAATTTTGTCCATATTCCCCCTTCTGTACTGTCCAGTGCTACCTGG
GGAGTCAGCTCAGGCATGGAAAGGCAGGCTTCAGGAGAACAGGAAAGCTCTTTGGCTAAGAAAAAGCCAA
ATATGGTCTGGGGCAAAGAAGGGAGCAGGCCCAGCCACCATGGAGTGACTGCAGCTGCTGCCACCGCCTC
TGCTGCTGCCCCTGCCTCAGCTTCTACAGCTTCAGGTGCCCTGCCCAAGACCAGTCCCAAAAAGAAGCAA
GCTCAAGAGAAGACCTCCTCCTCAGATGTCTCAAGAGGATACCAGGGGAAAAACTTGCCAACATGGGGAC
AGAGACTCAAATCAGCATTTGAGGGGCCAACGACTCTACCCCCAATCTCAGGGGTTGCTCTGCTAGGGAA
GGCAAGTAAATGCTCACTGCCTTCAGGGCCCAAAGAGTTCAAGTCCATCTGCACTGGGAAGAAATCCATA
GCAAAGAAGACAAGGGAGCCACAGGCAGGGCCCAAAGAAGATAACTCACCGAGAGATCCTGGTCTGCAGG
CCCAAGTTCCACCACACAGGGCAGAGCAGCCTTCCGTGTGCATGTATCGTGGAGAAATGAGCAGGGGAGA
CTTCAACATCAGAGCCCCTCAAGTTCCAGCAAACCCGCAGTTCTTCTCCTTGAGCCAGAGATGTGCCAGA
CCCAGAGCACCACCTGCACCTGCTGGTGAACAGAATCAACTTATGGATCCCATATTCCCTAATGAAGAAA
GTCAGCAAGTAATACATGGGACACCAGGTTGTGCACAGTGTGAGATGTTACAGAAGGAAATAGATGAACT
CAAGGAACAACTCGGGCTGGCACTGCTGTGA

Translation (546 aa):
MSSLGKAAVPTACDDEDTLLTGDANSQHQVSGSEAGLSQEGRERLGDPVISPGVAEGPSPLQGPLEIREG
EASLPGPESSDLGSGSKMEATEDTGSMLRDPEGGATSPVDQEEEVDMDFLPQLSIEAMTVMRELTNLQLR
KVCRYPSPRTCAAELAALWGNVDEGSNRGALSPSSVRGKQGPEGALYPRGLGRGRAWGTPRRHTIGRMVS
SEGVHYPSSNPVSSDEFSDTHVMKGTAGLKEDQARSSGLTELDNIARHTNVRGRGNFVHIPPSVLSSATW
GVSSGMERQASGEQESSLAKKKPNMVWGKEGSRPSHHGVTAAAATASAAAPASASTASGALPKTSPKKKQ
AQEKTSSSDVSRGYQGKNLPTWGQRLKSAFEGPTTLPPISGVALLGKASKCSLPSGPKEFKSICTGKKSI
AKKTREPQAGPKEDNSPRDPGLQAQVPPHRAEQPSVCMYRGEMSRGDFNIRAPQVPANPQFFSLSQRCAR
PRAPPAPAGEQNQLMDPIFPNEESQQVIHGTPGCAQCEMLQKEIDELKEQLGLALL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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