NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS88661.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88661.1 Public Mus musculus 14 Hnrnpc 23 108 98 CCDS HistoryNCBI Gene:15381Re-query CCDS DB by CCDS ID:88661.1Re-query CCDS DB by GeneID:15381See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88661.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000228748.1 ENSMUSP00000154166.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228748.1Link to Ensembl Protein Viewer:ENSMUSP00000154166.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228748Re-query CCDS DB by Protein ID:ENSMUSP00000154166
Original member Current member EBI ENSMUST00000228232.1 ENSMUSP00000154619.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228232.1Link to Ensembl Protein Viewer:ENSMUSP00000154619.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228232Re-query CCDS DB by Protein ID:ENSMUSP00000154619
Original member NCBI NM_001170983.2 NP_001164454.1 Updated not alive Link to Nucleotide Sequence:NM_001170983.2Link to Protein Sequence:NP_001164454.1Re-query CCDS DB by Nucleotide ID:NM_001170983Re-query CCDS DB by Protein ID:NP_001164454
Current member NCBI NM_001170983.3 NP_001164454.1 Accepted alive Link to Nucleotide Sequence:NM_001170983.3Link to Protein Sequence:NP_001164454.1Re-query CCDS DB by Nucleotide ID:NM_001170983Re-query CCDS DB by Protein ID:NP_001164454Link to BLAST:NP_001164454.1
Original member NCBI NM_001360180.1 NP_001347109.1 Updated not alive Link to Nucleotide Sequence:NM_001360180.1Link to Protein Sequence:NP_001347109.1Re-query CCDS DB by Nucleotide ID:NM_001360180Re-query CCDS DB by Protein ID:NP_001347109
Current member NCBI NM_001360180.2 NP_001347109.1 Accepted alive Link to Nucleotide Sequence:NM_001360180.2Link to Protein Sequence:NP_001347109.1Re-query CCDS DB by Nucleotide ID:NM_001360180Re-query CCDS DB by Protein ID:NP_001347109Link to BLAST:NP_001347109.1
Original member NCBI NM_001360181.1 NP_001347110.1 Updated not alive Link to Nucleotide Sequence:NM_001360181.1Link to Protein Sequence:NP_001347110.1Re-query CCDS DB by Nucleotide ID:NM_001360181Re-query CCDS DB by Protein ID:NP_001347110
Current member NCBI NM_001360181.2 NP_001347110.1 Accepted alive Link to Nucleotide Sequence:NM_001360181.2Link to Protein Sequence:NP_001347110.1Re-query CCDS DB by Nucleotide ID:NM_001360181Re-query CCDS DB by Protein ID:NP_001347110Link to BLAST:NP_001347110.1
Original member NCBI NM_001360182.1 NP_001347111.1 Updated not alive Link to Nucleotide Sequence:NM_001360182.1Link to Protein Sequence:NP_001347111.1Re-query CCDS DB by Nucleotide ID:NM_001360182Re-query CCDS DB by Protein ID:NP_001347111
Current member NCBI NM_001360182.2 NP_001347111.1 Accepted alive Link to Nucleotide Sequence:NM_001360182.2Link to Protein Sequence:NP_001347111.1Re-query CCDS DB by Nucleotide ID:NM_001360182Re-query CCDS DB by Protein ID:NP_001347111Link to BLAST:NP_001347111.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164454.1 293 Q9Z204-3 293 100% 0 0
NP_001347109.1 293 Q9Z204-3 293 100% 0 0
NP_001347110.1 293 Q9Z204-3 293 100% 0 0
NP_001347111.1 293 Q9Z204-3 293 100% 0 0

Chromosomal Locations for CCDS 88661.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 52075080 52075160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52075255 52075415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52075613 52075726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52077403 52077563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52081260 52081307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52081828 52081903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52084115 52084355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (882 nt):
ATGGCTAGCAATGTTACCAACAAGACAGATCCTCGGTCCATGAATTCCCGTGTATTCATTGGGAATCTCA
ACACTCTGGTGGTCAAGAAGTCTGATGTGGAGGCCATCTTTTCAAAGTATGGCAAAATTGTGGGCTGCTC
TGTGCATAAAGGCTTTGCCTTTGTCCAGTATGTTAATGAAAGAAATGCCCGAGCTGCTGTAGCTGGCGAG
GATGGCAGAATGATTGCTGGCCAGGTTTTAGATATTAACCTGGCTGCAGAGCCAAAAGTGAACCGAGGAA
AAGCAGGTGTGAAACGATCTGCAGCGGAGATGTACGGTTCCTCATTTGACTTGGACTATGACTTTCAACG
GGATTATTATGACAGGATGTACAGTTACCCAGCGCGGGTTCCTCCTCCTCCTCCTATTGCTCGAGCTGTG
GTGCCTTCCAAACGTCAGCGTGTTTCAGGGAACACCTCACGAAGGGGCAAAAGTGGATTCAATTCGAAGA
GTGGACAAAGGGGATCTTCTTCCAAGTCTGGAAAATTGAAAGGTGATGACCTTCAGGCCATTAAAAAGGA
GCTGACTCAGATAAAACAAAAAGTGGATTCTCTTCTGGAAAGCCTGGAAAAAATTGAAAAAGAACAAAGC
AAGCAAGCAGTAGAGATGAAGAATGAAAAGTCTGAAGAAGAGCAGAGCAGCGCCTCTGTGAAGAAAGATG
AGACTAATGTGAAGATGGAGTCTGAGGCAGGTGCAGATGACTCTGCTGAGGAGGGTGACCTGCTGGATGA
TGACGATAATGAAGATCGGGGGGATGACCAGCTGGAGTTGAAGGATGATGAAAAAGAGCCTGAGGAAGGA
GAAGACGACAGAGACAGCGCCAATGGGGAGGATGACTCTTAA

Translation (293 aa):
MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGE
DGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYYDRMYSYPARVPPPPPIARAV
VPSKRQRVSGNTSRRGKSGFNSKSGQRGSSSKSGKLKGDDLQAIKKELTQIKQKVDSLLESLEKIEKEQS
KQAVEMKNEKSEEEQSSASVKKDETNVKMESEAGADDSAEEGDLLDDDDNEDRGDDQLELKDDEKEPEEG
EDDRDSANGEDDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH