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Report for CCDS21502.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21502.2 Public Mus musculus 7 Mrpl48 23 108 98 CCDS HistoryNCBI Gene:52443Re-query CCDS DB by CCDS ID:21502.2Re-query CCDS DB by GeneID:52443See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 21502.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000150042.7 ENSMUSP00000116090.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000150042.7Link to Ensembl Protein Viewer:ENSMUSP00000116090.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000150042Re-query CCDS DB by Protein ID:ENSMUSP00000116090
Original member Current member NCBI NM_198831.3 NP_942128.2 Accepted alive Link to Nucleotide Sequence:NM_198831.3Link to Protein Sequence:NP_942128.2Re-query CCDS DB by Nucleotide ID:NM_198831Re-query CCDS DB by Protein ID:NP_942128Link to BLAST:NP_942128.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_942128.2 211 Q8JZS9 211 99.0521% 0 2

Chromosomal Locations for CCDS 21502.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 100549308 100549382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100550540 100550629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100552579 100552681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100559748 100559917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100565194 100565279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100571252 100571289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100574462 100574514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100582990 100583010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (636 nt):
ATGAGCGGAACCCTGGGAAAGGTGCTGGGTGTGTGGACCAATACTGTTTCTAAGCAAGGCTTTTCCCTCC
TAAGGTTCAGAAGTTTGGGAGAGAATCCCATTTTTTCTGCAGGTGGTATTCTGTGGACCAGTCGGCACTA
CAAGACAAAGCCCACTCGTGGCATCGGAAGATACAGACACTTGGTGAAAGTGCAGGAGCCCAAAAAGAAG
AAAGCAAAAGTAGAACTGAGAGCCATTAATGTGGGGACAGATTATGAATATGGGGTTTTAAACATCCACC
TGACAGCATATGACATGAGTCTGGCAGAAAGTTATGCCCAGTATGTCCACCGCCTCTGCAACCGGCTGTC
CATCAAAGTCGAGGAAAGCTATGCGATGCCTACCAAAACCATGGAAGTGATGCGACTGCCAGACCAAGGC
AACAAAATGGTCCTAGACTCCATCCTTACCACCCATGAGCGAGTGGTGCAGATCAGCGGTCTGAGTGCTA
CATTTGCAGAGATTTTCTTGGAAGTACTCCAAAGCAATCTTCCAGAAGGAGTCAGATTGTCCGTGAGGGA
GCACACTGAAGAAGACTTCAAGGGAAGGTTCAAAGCTCGGCCGGAACTGGAAGAGTTGTTGGCCAAGTTG
AACTAA

Translation (211 aa):
MSGTLGKVLGVWTNTVSKQGFSLLRFRSLGENPIFSAGGILWTSRHYKTKPTRGIGRYRHLVKVQEPKKK
KAKVELRAINVGTDYEYGVLNIHLTAYDMSLAESYAQYVHRLCNRLSIKVEESYAMPTKTMEVMRLPDQG
NKMVLDSILTTHERVVQISGLSATFAEIFLEVLQSNLPEGVRLSVREHTEEDFKGRFKARPELEELLAKL
N


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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